Rnym021360.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Rhopalosiphum nymphaeae
Gene Symbol
rdx
Assembly
GCA_036289425.1
Location
JAZAQC010000042.1:1052510-1062098[+]

Transcription Factor Domain

TF Family
BTB
Domain
zf-C2H2|ZBTB
PFAM
PF00651
TF Group
Zinc-Coordinating Group
Description
The BTB (for BR-C, ttk and bab) [6] or POZ (for Pox virus and Zinc finger) [1] domain is present near the N-terminus of a fraction of zinc finger (Pfam:PF00096) proteins and in proteins that contain the Pfam:PF01344 motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation [1]. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule [2]. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [5, 3, 4]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 3.6e-34 1.4e-31 109.4 0.4 2 109 289 394 288 395 0.96
2 2 4.1 1.6e+03 -0.2 0.0 80 109 397 426 393 427 0.85

Sequence Information

Coding Sequence
ATGACTACCGACACGACTGGCAGAATAAAACAGCTAACCGCCGTCATGCCGTCGGCACAAATAACGGCATGTCGTAGTTGTTTTAATATCCGCATGCGGTTAACGGAAACGCAACAGGTTACAGGTCTGAGgcTGCCAGTGGTGAGTGAGTGCTCGCCGCAGCAGACAGCCAGAGTGTCGGTGGCAGCGGGTTCGTCGGGATCGGTGAACGCGGCCGCATCAGCTGCCGCGGCCGCGGCGGCCGCCGTCGTGGCCGGTGCACCTAGTAGCAGCACCATGTCCGTATCTCGGGTACCCAGCCCGCCTCCTTCGTCCGAGGCGAATACACCCGTGGCGGAAAACTGGTGCTATACACAaGTGAAAGTTGTGAAGTTCAGTTACATGTGGACcattaacaattttagtttttgtcgGGAAGAAATGGGCGAAGTTTTAAAATCGTCTACATTCTCTGCCGGAGTAAACGACAAACTGAAAtgGTGTTTGCGAGTGAATCCTAAAGGCTTAGACGAGGAGAGCAAAGACTATTTGTCTTTGTATTTACTACTAGTCTCGTGCAACAAGACTGAGGTTAGAgcgaaattcaaattttcaattttaaatgccAAACGTGAAGAAACTAAGGCTATGGagAGTCAGAGGGCCTACAGATTCGTTCAAGGAAAAGATTGGGGgttcaaaaaattcattagGCGTGATTTTCTATTAGACGAAGCTAATGGCCTTTTACCCGACGATAAACTTACCATATTTTGCgagATGGCTCGTTTGCAGGTAAGCGTCGTTGCTGATAGTGTCAACATATCCGGTCAGTCAAATGCGGTCCAATTTAAAGTACCTGAATGCCGTCTGCCCGACGACCTAGGAAATTTATtcgaaatacaaaaatttagtgATGTAACGCTGTCGGTTAGCGGGCGAGAATTCCAAGCACACAAAGCTATACTTGCCGCGAGAAGTCCCGTGTTCGCCGCCATGTTTGAGCACGAGATGGAAGAACGCAAACAAAATCGTGTCGCCATTACCGACGTGGATCACGAAGTCCTCAGAGAAATGCTTCGGTTTATATACACCGGTCGGGCAGCGAATCTAGAGAGAATGGCGGACGATTTGTTAGCGGCAGCCGACAAGTATGCACTAGAAAGGCTGAAAGTCATGTGCGAAGAAGCGCTGTGTAACAATCTGTCGATTGACAACGCggctgatatattaatattggctGATCTGCACAGTGCCGACCAACTGAAAGTACAAACAATCGAGTTTATTAACACCCATGCGACCGATGTGATGGACACTACTGGCTGGAAAACCATGATACAGTCGCACCCACACCTAATAGCTGAAGCGTTTCGCGCACTAGCCACACAGCAAATACCGCCAATTGGACCGCCCCGAAAGCGCGTCAAACAAAGCTGA
Protein Sequence
MTTDTTGRIKQLTAVMPSAQITACRSCFNIRMRLTETQQVTGLRLPVVSECSPQQTARVSVAAGSSGSVNAAASAAAAAAAAVVAGAPSSSTMSVSRVPSPPPSSEANTPVAENWCYTQVKVVKFSYMWTINNFSFCREEMGEVLKSSTFSAGVNDKLKWCLRVNPKGLDEESKDYLSLYLLLVSCNKTEVRAKFKFSILNAKREETKAMESQRAYRFVQGKDWGFKKFIRRDFLLDEANGLLPDDKLTIFCEMARLQVSVVADSVNISGQSNAVQFKVPECRLPDDLGNLFEIQKFSDVTLSVSGREFQAHKAILAARSPVFAAMFEHEMEERKQNRVAITDVDHEVLREMLRFIYTGRAANLERMADDLLAAADKYALERLKVMCEEALCNNLSIDNAADILILADLHSADQLKVQTIEFINTHATDVMDTTGWKTMIQSHPHLIAEAFRALATQQIPPIGPPRKRVKQS