Cced008422.1
Basic Information
- Insect
- Cinara cedri
- Gene Symbol
- rdx
- Assembly
- GCA_902439185.1
- Location
- CABPRJ010000015.1:213323-218067[+]
Transcription Factor Domain
- TF Family
- BTB
- Domain
- zf-C2H2|ZBTB
- PFAM
- PF00651
- TF Group
- Zinc-Coordinating Group
- Description
- The BTB (for BR-C, ttk and bab) [6] or POZ (for Pox virus and Zinc finger) [1] domain is present near the N-terminus of a fraction of zinc finger (Pfam:PF00096) proteins and in proteins that contain the Pfam:PF01344 motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation [1]. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule [2]. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [5, 3, 4]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.2e-34 7.2e-32 110.0 0.4 2 109 197 302 196 303 0.96 2 2 2.9 9.4e+02 0.1 0.0 80 109 305 334 301 335 0.85
Sequence Information
- Coding Sequence
- ATGTACTATCGTCAATACAGATATAAATTATACCATAATATATCCTACCTACCTAACTTTTTGTTTATATTTTTATTACAGGTAAAAGTCGTGAAATTCAGTTATATGTGGACGATCAACAACTTTAGTTTTTGTCGCGAAGAAATGGGTGAAGTTTTAAAATCGTCCACGTTTTCCGCCGGCGTTAATGACAAACTAAAATGGTGTTTGCGGGTGAATCCTAAAGGATTAGATGAAGAAAGCAAAGACTATCTGTCTTTGTATTTATTACTAGTTTCATGCAACAAGACTGAGGTTAGAGCAAAATTCAAATTCTCAATATTAAACGCCAAACGAGAAGAAACCAAGGCCATGGAAAGTCAAAGGGCCTACAGATTCGTACAAGGAAAGGATTGGGGGTTCAAAAAGTTTATTAGACGTGATTTTCTATTGGACGAAGCCAATGGCCTTTTACCCGATGATAAACTTACCATATTTTGCGAGATGGCTCGTTTGCAGGTAAGTGTTGTAGCTGATAGTGTCAACATATCTGGCCAGTCCAACGCAGTTCAATTCAAAGTGCCCGAATGCCGTTTGCCTGACGACTTAGGAAATTTATTTGAAATTCAAAAATTTAGTGATGTTACGTTATCTGTTAGTGGACGAGAATTCCAAGCGCATAAAGCTATACTTGCTGCAAGAAGTCCTGTGTTTGCTGCGATGTTTGAGCACGAGATGGAAGAACGAAAACAGAATCGTGTCGCCATAACAGATGTAGATCATGAGGTTCTCAGAGAAATGCTCAGGTTTATCTACACTGGTCGAGCAGCCAATTTAGAAAGGATGGCAGACGATCTATTAGCAGCAGCGGACAAATATGCTTTAGAAAGGCTAAAAGTAATGTGTGAAGAAGCACTCTGTAACAACTTGTCGATAGACAATGCAGCCGATATATTAATATTGGCCGATTTACACAGTGCTGATCAACTAAAAGTACAAACCATCGAGTTCATTAATACTCATGCGACTGATGTTATGGATACCACTGGATGGAAAACCATGATTCAATCGCACCCACACCTAATAGCAGAAGCGTTTCGTGCTTTGGCCACACAGCAGATACCGCCTATTGGACCACCTCGGAAACGTGTTAAACAAAGCTGA
- Protein Sequence
- MYYRQYRYKLYHNISYLPNFLFIFLLQVKVVKFSYMWTINNFSFCREEMGEVLKSSTFSAGVNDKLKWCLRVNPKGLDEESKDYLSLYLLLVSCNKTEVRAKFKFSILNAKREETKAMESQRAYRFVQGKDWGFKKFIRRDFLLDEANGLLPDDKLTIFCEMARLQVSVVADSVNISGQSNAVQFKVPECRLPDDLGNLFEIQKFSDVTLSVSGREFQAHKAILAARSPVFAAMFEHEMEERKQNRVAITDVDHEVLREMLRFIYTGRAANLERMADDLLAAADKYALERLKVMCEEALCNNLSIDNAADILILADLHSADQLKVQTIEFINTHATDVMDTTGWKTMIQSHPHLIAEAFRALATQQIPPIGPPRKRVKQS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01304949;
- 90% Identity
- iTF_00184687;
- 80% Identity
- iTF_01304289; iTF_01329067; iTF_01305741; iTF_00134583; iTF_00136230; iTF_00308921; iTF_01434138; iTF_01169975; iTF_00135484;