Rnym010713.1
Basic Information
- Insect
- Rhopalosiphum nymphaeae
- Gene Symbol
- rcor1
- Assembly
- GCA_036289425.1
- Location
- JAZAQC010000013.1:15275728-15282245[-]
Transcription Factor Domain
- TF Family
- MYB
- Domain
- Myb_DNA-binding domain
- PFAM
- PF00249
- TF Group
- Helix-turn-helix
- Description
- This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.6e-06 0.0017 18.9 0.0 3 46 126 169 124 169 0.95 2 2 4.1e-10 4.4e-07 30.4 0.0 3 45 351 393 349 394 0.95
Sequence Information
- Coding Sequence
- ATGGCTAACGATAATTTGGAAGATTTGAAAAACGGCAAACGACCAGCACCGCCTGCAAATACTGAAGTGCCGGAATCTAAAAACGAACTTATACAAGAAAACGctGAAAAAATCAGAGTGGGACGTGATTACCAGGCTGTCATTCCAAAACTATTAGTACTCCCAAAAAATAGACGTGAACGACTGAACAAAAAAGCACTATTAGTTTGGTCTCCAACtgaaaatatttcagaaattaaattaaatgaatacattttattatcaaaagaaaaatatggttacAATAGTGAACAAGCGTTGGGCATGCTATACTGGCATCACCACGACATGGAAAAAGCTCTTAGTGACCTATCAAATTTTGCACCTCTACCAGATGATTGGTCGACCGATGATAAGGTTACATTTGAATCAGCTTTTAATAGTAttggaaaaaattttttacgcATTAAACAAATGATGCCTGATAAACCAATAGCATCGTtagtcaaatattattatttatggaaaAATAAGAGAAAGAAGAGCAGCGTTATAGATCGACAAGCTAAAAAATTAGCTAATGTCCGTACAAATGAGAATCAAAACGGGAGTAGAGAAGGGTCAAGTTCAGCAGAGTCTGAACCTGATGacaagaaggaCCCTGGGGAAGGAAGTTCGAAACAGATTTGTTCAGTTTGTGGAGTTTTGGTTACTATGCTTTATACTACCTTAAAAGGACCAATGTGTGGTACATGCCAATCACATTTCAATAGGACTAATGGTGGTATTAGACCAACATTAGGGCCACCACGTCCAAATAATCGCCATTTGAATGTCGCTCGTAATAAACGTTTACCACCACGAGGCATGTATGTTAATCATGATGATCTTCAATCTATTGCATCTGGATCCAATGGACAAGATATCTTATTGACAATGGACGATGAGGTTGTATCATTAAAATGCAAAATACAGTCTAACAAACAAGATATTGGGCATGTGCATAAGAAACTTAAACTAGATGTTTCTGAATATAGAGACAGTGAACCTTCAACAAGTCGTATTACATCTCGTTGGAGCAATGATGAAGTTATGCTTGCTATTCAAGGAATGCGCAAGTATGGAAAGGATTTTAAAGCCATTGCTGAAACAATGGGAACAAAGACTCATACGCatttgaaatcattttatgCCCATTATCGTAAGCGTTATAAACTAGATTTAATACTCAAAAAGTTTGACGCTGAGCAAAATTCGATAATTGAGCTTAGTGATGATGAGGAGGAACcggtcatCAGTAAAGATGAGCCTTCATCTACAATAACAAGACAGAGTACTCCATCTGCTTTAGCTTCTGGAAGTCGACTAATTAGTAACCTTTCATTGAATTCTAAAGCACATCAAACGGCTGCTGCTGCAAAGTGA
- Protein Sequence
- MANDNLEDLKNGKRPAPPANTEVPESKNELIQENAEKIRVGRDYQAVIPKLLVLPKNRRERLNKKALLVWSPTENISEIKLNEYILLSKEKYGYNSEQALGMLYWHHHDMEKALSDLSNFAPLPDDWSTDDKVTFESAFNSIGKNFLRIKQMMPDKPIASLVKYYYLWKNKRKKSSVIDRQAKKLANVRTNENQNGSREGSSSAESEPDDKKDPGEGSSKQICSVCGVLVTMLYTTLKGPMCGTCQSHFNRTNGGIRPTLGPPRPNNRHLNVARNKRLPPRGMYVNHDDLQSIASGSNGQDILLTMDDEVVSLKCKIQSNKQDIGHVHKKLKLDVSEYRDSEPSTSRITSRWSNDEVMLAIQGMRKYGKDFKAIAETMGTKTHTHLKSFYAHYRKRYKLDLILKKFDAEQNSIIELSDDEEEPVISKDEPSSTITRQSTPSALASGSRLISNLSLNSKAHQTAAAAK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01167539;
- 90% Identity
- iTF_01304110;
- 80% Identity
- -