Rnym017516.1
Basic Information
- Insect
- Rhopalosiphum nymphaeae
- Gene Symbol
- kn
- Assembly
- GCA_036289425.1
- Location
- JAZAQC010000023.1:1198585-1215581[+]
Transcription Factor Domain
- TF Family
- COE
- Domain
- COE domain
- PFAM
- AnimalTFDB
- TF Group
- Helix-turn-helix
- Description
- This is the helix-loop-helix domain of transcription factor COE. It is responsible for dimerisation [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.8e-119 2.3e-115 386.6 9.9 205 563 1 385 1 393 0.76
Sequence Information
- Coding Sequence
- ATGCGAAGGTTTCAAgTGGTCATTTCGACACAAGTTACGGTTGAAGGTCCTCTGTTGGCTGTATCGGATAACATGTTCGTACACAACAATTCAAAACACGGACGCCGAGCAAAACGTTTAGACCCAAATGACGGTATGTTTTCTCCTCTACCAGTGGCGACACCGTGTATAAAACACATTACACCGAGCGAAGGCTGGACCCACGGCGGAGCTTCGGTCACTATATTGGGTGATAATTTTTTCGACGGGTTGCAAGTAGTTTTCGGCAGCAATCTAGTTTGGAGCGAACTATTGACTCCACACGCCATACAAGTGCAAACACCGCCCAGGCCCATACCCGGCATCGTAGAGGTAACGTTGTCGTATAAATCCAAACAGTTTTGCAAAGGATCTCCCGGCAGATTCGCATACATatcacTCAGCGAGCCTACCATCGATTACGGTTTCCAAAGACTACAAAAATTTGTACCCAGATATCCAGGTGATCCCGAAAAACTACCAAAGGAGGTGATCCTGAAGCGTGCAGCGGATTTAGCGGAAGCGCTATACACGATGCCCCGAAACAATCAGCTTTCGTTATCGCTGCCCAGATCTCCGTGCTCGCGGGACAGAGACAGCAACAACATGTCGTCGTCGGCGGGGGCGGTGGGCACCGGATTTAACCCGTACACCGGACAGCTGGCGGTAACCGTACACGACCACGGTGCTACTGGTCAATGGAACGACGACGATTACGGACGCGGTCAGAGCAGCAGCGTGTCGCCCAGAGGCGGCGGTTACGGGTCCAGTGCATCGACGCCGCATTCGACCAACGGCACAAACGGAAGCACGTACATAAATCCGCCACCAACCAGTGGTGGCGGTGGAGGTGGTGGCGGTGGTGGTGGCGGCGGAAGTGGCGGTGGTGGTGGAGGCGGTGGAAACCCGTCCAATTCCGGTCCCAACAACGGTAACGGAGGAAATTCCGGTTACAACGGTTCCGCCATGCCTAACACCACGTCGGCCGCGTCGTCCGTTCAACTGACCAACATGAACTCGCCCACGGCCACTTCACACCCATCACTCTTCAACTCTTCCTCGAGAATGGGCACTTTGGTAACATCTCCATTCGCAATGAATCCGTTCGCTTTACCAAACTGCAACGGACAGCCGTACGCCACGAGCCCGTTAATCAGTTCGTCAgcgaaataa
- Protein Sequence
- MRRFQVVISTQVTVEGPLLAVSDNMFVHNNSKHGRRAKRLDPNDGMFSPLPVATPCIKHITPSEGWTHGGASVTILGDNFFDGLQVVFGSNLVWSELLTPHAIQVQTPPRPIPGIVEVTLSYKSKQFCKGSPGRFAYISLSEPTIDYGFQRLQKFVPRYPGDPEKLPKEVILKRAADLAEALYTMPRNNQLSLSLPRSPCSRDRDSNNMSSSAGAVGTGFNPYTGQLAVTVHDHGATGQWNDDDYGRGQSSSVSPRGGGYGSSASTPHSTNGTNGSTYINPPPTSGGGGGGGGGGGGGSGGGGGGGGNPSNSGPNNGNGGNSGYNGSAMPNTTSAASSVQLTNMNSPTATSHPSLFNSSSRMGTLVTSPFAMNPFALPNCNGQPYATSPLISSSAK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00308623;
- 90% Identity
- iTF_01346872;
- 80% Identity
- -