Basic Information

Insect: Rhopalosiphum maidis
Gene Symbol: stc
Assembly: GCA_003676215.3
Location: NC:2739686-2754398[+]

Transcription Factor Domain

TF Family: zf-NF-X1
Domain: zf-NF-X1 domain
PFAM: PF01422
TF Group: Zinc-Coordinating Group
Description: This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.76 8.9e+03 -3.7 1.6 15 19 148 152 147 152 0.81

2 14 0.031 3.6e+02 0.7 0.5 4 10 180 186 179 186 0.96

3 14 4.1e-06 0.048 13.1 16.7 3 18 201 216 200 217 0.94

4 14 8.5e-06 0.1 12.1 10.0 1 18 253 270 253 271 0.92

5 14 1.1e-07 0.0013 18.2 10.4 1 18 311 328 311 329 0.94

6 14 0.65 7.6e+03 -3.5 0.3 5 10 360 365 360 366 0.73

7 14 6e-05 0.7 9.4 13.2 4 18 378 392 371 393 0.86

8 14 0.89 1e+04 -4.0 2.5 5 10 419 424 419 424 0.94

9 14 0.0051 60 3.2 7.2 1 11 430 440 430 441 0.94

10 14 0.36 4.2e+03 -2.7 2.0 4 10 445 451 444 451 0.91

11 14 2e-08 0.00024 20.5 7.5 1 18 457 474 457 475 0.91

12 14 0.84 9.8e+03 -3.9 10.5 1 18 514 531 514 532 0.88

13 14 0.015 1.8e+02 1.7 19.0 1 19 568 588 558 592 0.81

14 14 1.2e-05 0.14 11.6 12.1 1 17 598 615 598 617 0.84

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.76	8.9e+03	-3.7	1.6	15	19	148	152	147	152	0.81
2	14	0.031	3.6e+02	0.7	0.5	4	10	180	186	179	186	0.96
3	14	4.1e-06	0.048	13.1	16.7	3	18	201	216	200	217	0.94
4	14	8.5e-06	0.1	12.1	10.0	1	18	253	270	253	271	0.92
5	14	1.1e-07	0.0013	18.2	10.4	1	18	311	328	311	329	0.94
6	14	0.65	7.6e+03	-3.5	0.3	5	10	360	365	360	366	0.73
7	14	6e-05	0.7	9.4	13.2	4	18	378	392	371	393	0.86
8	14	0.89	1e+04	-4.0	2.5	5	10	419	424	419	424	0.94
9	14	0.0051	60	3.2	7.2	1	11	430	440	430	441	0.94
10	14	0.36	4.2e+03	-2.7	2.0	4	10	445	451	444	451	0.91
11	14	2e-08	0.00024	20.5	7.5	1	18	457	474	457	475	0.91
12	14	0.84	9.8e+03	-3.9	10.5	1	18	514	531	514	532	0.88
13	14	0.015	1.8e+02	1.7	19.0	1	19	568	588	558	592	0.81
14	14	1.2e-05	0.14	11.6	12.1	1	17	598	615	598	617	0.84

Sequence Information

Coding Sequence: ATGCCGAGAACTAGCAGTCGTAAAAGGAACAGTCGTCGAATTGATAGTACAGTTAGGGTTACTTCCAATTTATCACCAAACGCTCCAGAATTTATtcctatagcaAATGATGAGACTACTTCTAATCAAAGAGGAAATATAGTAATTCAGTCAATGACATTTTGTGCAAGTTCCAGTACATCAAATAATAGTGGGAATAATAGTAACTCTAATTATGAAACTAGTACTATAGTTTCATCTATACCagatgcattaaaaaataagggtCAACGAGATTTACTTATTAACCTTTTGAATGAATGCAGAGTGGATTGTGTAATATGTTATGAACGAGCTAAAAATGTAGAACAAATTTGGAACTGTCGTAATTGTTACcaaattatgcatttaaaatgcataatagtTTGGTTCATTAAATCTCATCGTAatgcTGTCTGGAGATGTCCAGCTTGTCAAAGTGAAGTGACTGgaaaaccaaaatatgtatgttattgTGGTACTTTACCAAATCCATATCATAACAATGTTGACATACCTCATTCGTGTGGTCAAGTTTGTGGATTGCAaagaaaaaattctaatttaaactataatgatTGTCATCATAAGTGTACACTACTTTGTCATCCTGGTCCTTGTCCACAATGTGTTGTACAAGTTTTAAGATCATGTGGATGTGGAAAAAAACGAGTTTATGCACAATGTGGACAGTCAACCCAGATTATGTGCGACAATGTTTGtctcaaaaaattaaactgcCAAATACATGaatgtgaaaaaatatgtcatgCTGATAGCTGCGAACCATGTAATAAGGGCTGTCCTCAAATGTGTTATTGTGGAAAATCAGAGCGGGAAGTACCATGCACTCAAGAAAATGCCATGGTGATGTACTACAGCTGTGGAAATctgtgtgaaaaaaaattatcttgcGAAAATCACTTATGCCAGAAAATATGTCATGTTGGTCAATGTGACCCATGTATAGCTTTATCTGTCAATAGATGCCCTTGTGGAAAACGGTTATTGACTGAAAATGAACTTGGCACTCGTACATTATGCACACAACCAATACCCACGTGTGACCTACCATGTGGAAAACCTTTAGAATGTGGTCCCCCagaaaatcCACATCTATGTGAACAAAAGTGTCATGAAGGTCCGTGTGTTCGCTGTGAACTAAAAaccaaatatgtatgtaaatgtGGTAGTAGATCCAAggaaataaaatgcaattctGTGACCAGTGAATTAACTTGCAAAAAGAAATGTAACaagaTGATGTCTTGTGGTAAACATAGATGTATGACTATGTGTTGTAATGCACAAGAACATATATGTACCAGAACTTGTAATGGACTATTAAATTGCCGTATACATCGTTGTGATCGTGTGTGCCATACTGGCAGCTGTGCAACGTGCTATGAAGCAAGTTTTGAAGAGTTGTATTGTCGTTGTGGCAATAGTTTCATTTCTCCTCCAATCAGATGTGGTACTCGTCCACCATTATGTACATTACCTTGTTCAAGAGAACATGAATGTGGTCATCCAGCTACCCATATATGTCACGACGAGGAAGAATGTCCTCCTTGTATAGCTTTAActgaaaaattgtgttttggtGGTCATGagCTGCGATTTGCTATACCATGTCATATAAAGAATGTATCATGTGGAATGCCTTGTGGCATTCCACTTCCTTGCAAAAGACATACTTGTACCAAACCATGTCATGCACCACCATGTAATACCGGTCCATGTCGGTTACCATGTAATTTACCAAAATTAGATTGCAGTCATCCATGTTCTAAACCTTGTCATGATGGTTCATGTCCATCAATAGCATGcaaaataatggTGAGTGTTAGCTGTATTTGTGGGAATTTGACAGAAGCTAGGATATGTTCTGATCCCAAGGTGGTTGAATATCGTCTTCAAGTTAAAGCACAATCAATGAGCTTCCTAGACAATATTGTTGACTCATCGCCaatcataaaatcatataaaattttggaGTGTACAACAGAATGTGCTAAATTAGAAAGAAATCGTCGTATTGCTCTTGCACTTCAAATCCGCAATCCAGATTTATCTCCTAATGTCACTCCACGATATTCAGATTTTATGAAAGAATTTGCAAAAAAAGATGCACCATTCTGTAGTTATGTCCATGAAAAACTTGCTGAATTAGTCACTAATGCCAAACAAtcTAAACAAAATTCTCGAAGTCATTCATTTGAAGTAATGAAGTATGAAAAACGGAAATTGATTCATGAGTACAGTGAACATTTTGGATGTGAATCAGTAGCTTATGACGCTGAGCCAAATAGAAATGTTGTAGCTACAGCTCTTaaagaaaaaTCATGGCTTCCCAATTATAGTGTAGTAGAAGTTGTACAACGTGAAAGTGGATGTCCACGAGTCAACCCATTTGCAAGCATTCAAAAGCGAAACACCATTATTCTAAACAAAAAACTCTaa
Protein Sequence: MPRTSSRKRNSRRIDSTVRVTSNLSPNAPEFIPIANDETTSNQRGNIVIQSMTFCASSSTSNNSGNNSNSNYETSTIVSSIPDALKNKGQRDLLINLLNECRVDCVICYERAKNVEQIWNCRNCYQIMHLKCIIVWFIKSHRNAVWRCPACQSEVTGKPKYVCYCGTLPNPYHNNVDIPHSCGQVCGLQRKNSNLNYNDCHHKCTLLCHPGPCPQCVVQVLRSCGCGKKRVYAQCGQSTQIMCDNVCLKKLNCQIHECEKICHADSCEPCNKGCPQMCYCGKSEREVPCTQENAMVMYYSCGNLCEKKLSCENHLCQKICHVGQCDPCIALSVNRCPCGKRLLTENELGTRTLCTQPIPTCDLPCGKPLECGPPENPHLCEQKCHEGPCVRCELKTKYVCKCGSRSKEIKCNSVTSELTCKKKCNKMMSCGKHRCMTMCCNAQEHICTRTCNGLLNCRIHRCDRVCHTGSCATCYEASFEELYCRCGNSFISPPIRCGTRPPLCTLPCSREHECGHPATHICHDEEECPPCIALTEKLCFGGHELRFAIPCHIKNVSCGMPCGIPLPCKRHTCTKPCHAPPCNTGPCRLPCNLPKLDCSHPCSKPCHDGSCPSIACKIMVSVSCICGNLTEARICSDPKVVEYRLQVKAQSMSFLDNIVDSSPIIKSYKILECTTECAKLERNRRIALALQIRNPDLSPNVTPRYSDFMKEFAKKDAPFCSYVHEKLAELVTNAKQSKQNSRSHSFEVMKYEKRKLIHEYSEHFGCESVAYDAEPNRNVVATALKEKSWLPNYSVVEVVQRESGCPRVNPFASIQKRNTIILNKKL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00136497; iTF_01033404;
90% Identity: iTF_01033404;
80% Identity: -