Basic Information

Insect: Aphis gossypii
Gene Symbol: stc
Assembly: GCA_004010815.1
Location: NW:3610082-3628111[-]

Transcription Factor Domain

TF Family: zf-NF-X1
Domain: zf-NF-X1 domain
PFAM: PF01422
TF Group: Zinc-Coordinating Group
Description: This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.76 9.5e+03 -3.7 1.6 15 19 145 149 144 149 0.81

2 14 0.03 3.8e+02 0.7 0.5 4 10 177 183 176 183 0.96

3 14 4.1e-06 0.051 13.1 16.7 3 18 198 213 197 214 0.94

4 14 2.1e-05 0.27 10.8 9.9 1 18 250 267 250 268 0.92

5 14 6.5e-08 0.00082 18.9 12.7 1 19 308 326 308 326 0.93

6 14 0.1 1.3e+03 -0.9 0.4 5 10 357 362 357 363 0.90

7 14 6e-05 0.75 9.4 13.2 4 18 375 389 368 390 0.86

8 14 0.89 1.1e+04 -4.0 2.5 5 10 416 421 416 421 0.94

9 14 0.0013 16 5.1 7.6 1 11 427 437 427 438 0.95

10 14 0.32 3.9e+03 -2.5 2.2 4 10 442 448 441 448 0.91

11 14 4.5e-08 0.00056 19.4 6.4 1 18 454 471 454 472 0.91

12 14 0.83 1e+04 -3.9 10.5 1 18 511 528 511 529 0.88

13 14 0.0027 34 4.1 17.0 1 19 565 585 555 589 0.86

14 14 1e-05 0.13 11.8 13.4 3 17 596 612 595 614 0.85

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.76	9.5e+03	-3.7	1.6	15	19	145	149	144	149	0.81
2	14	0.03	3.8e+02	0.7	0.5	4	10	177	183	176	183	0.96
3	14	4.1e-06	0.051	13.1	16.7	3	18	198	213	197	214	0.94
4	14	2.1e-05	0.27	10.8	9.9	1	18	250	267	250	268	0.92
5	14	6.5e-08	0.00082	18.9	12.7	1	19	308	326	308	326	0.93
6	14	0.1	1.3e+03	-0.9	0.4	5	10	357	362	357	363	0.90
7	14	6e-05	0.75	9.4	13.2	4	18	375	389	368	390	0.86
8	14	0.89	1.1e+04	-4.0	2.5	5	10	416	421	416	421	0.94
9	14	0.0013	16	5.1	7.6	1	11	427	437	427	438	0.95
10	14	0.32	3.9e+03	-2.5	2.2	4	10	442	448	441	448	0.91
11	14	4.5e-08	0.00056	19.4	6.4	1	18	454	471	454	472	0.91
12	14	0.83	1e+04	-3.9	10.5	1	18	511	528	511	529	0.88
13	14	0.0027	34	4.1	17.0	1	19	565	585	555	589	0.86
14	14	1e-05	0.13	11.8	13.4	3	17	596	612	595	614	0.85

Sequence Information

Coding Sequence: ATGCCGAGAACTAGCAGTCGTAAAAGGAACAGCCGTCGAATTGATAGTACAGTTAGGGTGACTTCCAATTTATCACCAAACGCACCAGAATTTGTTCCcaatgcaAATGATGAGACTACTGCTAATCAAAgagaaaatatagtaattcaGTCAATGACATTTTGTGGAAGTTCCAGTGCATCAAATAGTAGTGGTAGTAACTCTACCTATGAAGCTACAAGTATATCATCTATACCAGATACATCAAAAAATAAGGGTCAAAGAGATTTACTTATTAACCTTTTGAATGAAAGCAAAGTAGATTGTGTAATATGTTATGAACGAGCTAAAAACGTAGAACAGATTTGGAACTGTCGTAATTGTTACcaaattatgcatttaaaatgtgtaatagtTTGGTTCGTTAAATCCCATCgtaGTGCGATCTGGAGATGTCCAGCTTGTCAATGTGAAGTGATTGGAAAACCAAAATATGTGTGTTTTTGTGGTACTGTTCCAAATCCATATCATAACAATGTGGACATACCTCATTCTTGTGGTCAAGTTTGTgggttgcaaaaaaaaaatcctaattTAGATTATGATGATTGTCATCATAAGTGTACACTACTTTGTCATCCTGGTCCTTGTCCACAATGTGTTGTACAAGTTTTAAgATCATGTGGATGTGGAAAAAAACGAGTTTATGCTCTATGTGGACAGTCAACCAAGGTAGTCTGTAACAATGTTTGTCTTAAGAAATTAAACTGCCAAATCCATGAATGTGAAAAAATGTGTCATGCTGATAGCTGCGAACCATGTAATAAGGGCTGTCCTCAAAtgtgtTATTGTGGTAAATCGGAGCGACAAGTACCATGCACTGTAGAGAATGCCATGGTGATGTATTACAGCTGTGGAAGTctgtgtgaaaaaaaattgtcttgcGAAAATCACTTATGCCAGAAACTGTGTCATGTTGGTCCATGTGAGCCATGTAAAGCATTATCTGTTAATACATGTCCTTGTGGAAAACGGCCATTAACTGAAGATGAACTTAGCTCCCGTACATTATGCACACAACCAGTACCCACATGTGACCAACCATGTGGAAAACCTCTAGAATGTGGTCCCCCAGaaaatcctCATCTATGTGAACAAAAGTGTCATGAAGGCCCGTGTGTTCGTTGTGAACTAAAAAccaaatatgtatgtaaatgtGGTAGTAGATCCaaggaaataaaatgtaattctgTGACCAGTGAATTgacttgcaaaaaaaaatgtaacaagATGATGTCTTGCGGTAAACATAGATGTATGACAGTATGTTGTAATGCACAAGAACATGTATGTACCAGAACTTGTAACGGACTATTAAATTGCCGTATACATCGTTGTGATCGTGTTTGCCATACTGGTAGCTGTGCAATGTGCTATGAAGCAAGTTTTGAAGAGTTGTATTGTCGATGTGGCAATAGTTTCATTACTCCTCCTATCAGTTGTGGTACTCGTCCGCCATTATGTACATTACCTTGTTCAAGAGAACATGAATGTGGTCATCCAGCTACTCATATATGTCATGACGAGGAAGAATGCCCTCCTTGTATAGCTTTGActgaaaaattgtgttttggtGGTCATGagctGCGATTTGCTATACCATGTCATATAAAAAACGTGTCGTGTGGAATGCCATGCGGAATTCCACTTTCTTGCAATAGACATACTTGTGCCAAACCATGTCATGCACCGCCATGTAATACAGGTCCTTGTCGGTTACCATGCAATTTACCAAAGTTGGATTGTAATCATCCATGTTCTAAACCTTGTCATAATGGTCCTTGTCCGTCAATAGCATGCAAAATAAtggtGAGTGTTAGTTGTATTTGTGGAAATTTGACAGAAGTTAGGATATGTTCTGATCCCAAATTGGTTGAATATCGTCTTCAAGTTAAAGCACAATCAATGAGCTTACTAGACAATATTGTTGACTCATCGCCaactataaaatcatataaaatTTTGGAGTGTACAACAGAATGTGCTAAATTAGAAAGAAATCGTCGTATTGCCCTAGCACTTCAAATTCGCAATCCAGATTTATCTCCCAACGTCACTCCACGGTATTCAGATTTCATGAAAGAATTTGCGAAAATAGATGCGCCGTTTTGTAATTATGTCCATGAAAAACTTGCTGAATTAGTAACTAGTGCTAAACAAtctAAACAAAATTCTCGAAGTCATTCATTTGAAGTAATGAGGTATGAAAAACGAAAATTGATTCACGAATACAGTGAACATTTTGGATGTGAATCAGTAGCTTATGATGCCGAACCAAATAGAAATGTTGTTGCTACAGCTCTTaaagaaaaatcATGGCTTCCTAATTATAGTGTAGTAGAAGTTGTACAACGTGAAAGCGGATGCCCACGAGTCAATCCATTTGCAAGCATTCAAAAACGAAACAccgttattttaaacaaaaaattctaa
Protein Sequence: MPRTSSRKRNSRRIDSTVRVTSNLSPNAPEFVPNANDETTANQRENIVIQSMTFCGSSSASNSSGSNSTYEATSISSIPDTSKNKGQRDLLINLLNESKVDCVICYERAKNVEQIWNCRNCYQIMHLKCVIVWFVKSHRSAIWRCPACQCEVIGKPKYVCFCGTVPNPYHNNVDIPHSCGQVCGLQKKNPNLDYDDCHHKCTLLCHPGPCPQCVVQVLRSCGCGKKRVYALCGQSTKVVCNNVCLKKLNCQIHECEKMCHADSCEPCNKGCPQMCYCGKSERQVPCTVENAMVMYYSCGSLCEKKLSCENHLCQKLCHVGPCEPCKALSVNTCPCGKRPLTEDELSSRTLCTQPVPTCDQPCGKPLECGPPENPHLCEQKCHEGPCVRCELKTKYVCKCGSRSKEIKCNSVTSELTCKKKCNKMMSCGKHRCMTVCCNAQEHVCTRTCNGLLNCRIHRCDRVCHTGSCAMCYEASFEELYCRCGNSFITPPISCGTRPPLCTLPCSREHECGHPATHICHDEEECPPCIALTEKLCFGGHELRFAIPCHIKNVSCGMPCGIPLSCNRHTCAKPCHAPPCNTGPCRLPCNLPKLDCNHPCSKPCHNGPCPSIACKIMVSVSCICGNLTEVRICSDPKLVEYRLQVKAQSMSLLDNIVDSSPTIKSYKILECTTECAKLERNRRIALALQIRNPDLSPNVTPRYSDFMKEFAKIDAPFCNYVHEKLAELVTSAKQSKQNSRSHSFEVMRYEKRKLIHEYSEHFGCESVAYDAEPNRNVVATALKEKSWLPNYSVVEVVQRESGCPRVNPFASIQKRNTVILNKKF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01304545;
90% Identity: -
80% Identity: -