Rmai005972.1
Basic Information
- Insect
- Rhopalosiphum maidis
- Gene Symbol
- -
- Assembly
- GCA_003676215.3
- Location
- NC:71241571-71248775[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 9.5e-15 8.5e-12 43.9 0.1 9 72 153 222 147 224 0.93 2 2 8.3e-18 7.5e-15 53.7 0.0 8 72 326 396 321 400 0.94
Sequence Information
- Coding Sequence
- ATGGATATAATTAAGAGAAAGACATCTGCtggtttaaaaaaaaccaATAATCTTTCAAACCTAGAAGCACATTTTATTGGATTTGATGTTGATGATAAAGTACTGATAAGAattgaaaataagaaaaaattattaaaaatggaaCTTAAAAAAGAAACGAGTGAGCCTATGGAAGTAGACGAGCCAACTGACAGTCCATCCATTggtcataataatcatattaataaaaagaaactatCTAAATCAAGAAAACCTAATGGTATAAAGAATAATTGGAGTAATAAGAGGCATAAGAAAGACAATATACGCAATGATACCTTAGAATCATTCAAATTACATGTTCCGCCTTCTTTAGTACTTACAACTCCAAAATTCAACATAACTTCTTCAAACACTAGAATTCTCCGTAGTGCTGGcagaaaaatgaattatgatattagagatgctatttttaaacttCCATTTAAGCATGgatgGAAACGAGAAATAGTATACAGATCATCAGTTGAATCTGGTGTTGTTACTCGGGCCAATAGAAGTGGTGATGTGTACTATTATTCTCCAAATGGCCAGAAACTAAAATCATTACGAGACATTAAGGAACAATTGGATATTTCATCTGATAAAACTTCTCTTACTATAGAAAGTTTTACATTTGTAACAAAACCAATTGgcataaatgataaatcaaaagaattggatGACACTACTGTTGGCGTTGCTGTTAAacctaaaaaatctaaaacaccTAAACAACGCCCACCATTTGATTCTGAATTGACAGGTGATGGAAACAAAAAGTCTGTTAGTAAACCGAGACTTGATTTAAAAAGAGCGAAGACTTCCACAACATCAAAATCTAATAAagaaCTTAACACTTCTACAttcaattatacttatatagaaCCACCTAAAAATAGAATGCCTTATGGTGCAGgaagaaatattaattgtctAATAAccgattctatttttaaactccCATTTGAGCAtggatgGAAACGAGAATTAGTATATAGAACATCAAGTGAATCTGCTGTTGTTACTGAGGACAATAGAAGTGGtgatatatactattactCACCAAGTGGCCAGAAACTACGATCATTACAAGAAATACAGGAATATTTGAATATCTCATTTGATAAAACTACTCTAACTATAGACAATTTCACTTTCTTAGCAAAACCGATTTTCGTGTATGATGAATCAAAAGAACGAATCAGAGATGcagatttcaaattatataagaatgaGACTACTGATGATATTGCTGTTCTACTTCAAAAATCTATAACACCTGAACAGCGCACACCACTTTATTATGGATTGACATTTGATGTAAACAAAAAGTCTGCTTGTCAAATGAgacattttctaaatatgtGA
- Protein Sequence
- MDIIKRKTSAGLKKTNNLSNLEAHFIGFDVDDKVLIRIENKKKLLKMELKKETSEPMEVDEPTDSPSIGHNNHINKKKLSKSRKPNGIKNNWSNKRHKKDNIRNDTLESFKLHVPPSLVLTTPKFNITSSNTRILRSAGRKMNYDIRDAIFKLPFKHGWKREIVYRSSVESGVVTRANRSGDVYYYSPNGQKLKSLRDIKEQLDISSDKTSLTIESFTFVTKPIGINDKSKELDDTTVGVAVKPKKSKTPKQRPPFDSELTGDGNKKSVSKPRLDLKRAKTSTTSKSNKELNTSTFNYTYIEPPKNRMPYGAGRNINCLITDSIFKLPFEHGWKRELVYRTSSESAVVTEDNRSGDIYYYSPSGQKLRSLQEIQEYLNISFDKTTLTIDNFTFLAKPIFVYDESKERIRDADFKLYKNETTDDIAVLLQKSITPEQRTPLYYGLTFDVNKKSACQMRHFLNM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01304181; iTF_01304183; iTF_01304182;
- 90% Identity
- iTF_01304183;
- 80% Identity
- -