Rmai005695.1
Basic Information
- Insect
- Rhopalosiphum maidis
- Gene Symbol
- -
- Assembly
- GCA_003676215.3
- Location
- NC:69927100-69941995[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.6e-16 5e-13 47.9 0.0 9 72 72 141 66 143 0.94 2 2 6.3e-20 5.6e-17 60.5 0.0 8 72 255 325 250 329 0.94
Sequence Information
- Coding Sequence
- atggaaCTTAGTAAAGAAACGAGTGAGCCTATGGAAGTAGACAAGCCAACTGACAGTCCATCCattgttcataataatcatgttaataaaaagaaactatCTAAATCAAGTAaacttACTACTCCTAAATTCAACTTAACTTCTTCTAACACTAGAATTCTCCGTAGTGCtggaagaataaaaaattatgatataagagatgcaatttttaaaatcccatTTGAGCAtggaTGGAAACGAGAATTAGTATACAGAACATCGGGTGAATCTGGTGTTGTTACTCGAGCCAATAGAAGTGCcgatgtatactattattctcCAAATGGCCAGAAACTAAAATCATTACGAGACATTAAGGAACAATTGGATATTTCATCTGATAAAACTTCTCTTACTATAGAAAGTTTTACATTTGTAACAAAACCAATTGgcataaatgataaatcaaaAGAACTGATAAGATCTAAATATGTCAAATCATttaaggatGACACTACTGTTGGCGTTGCTGTTAAacctaaaaaatctaaaacaccTAAACAACGCCCACCATTTGATTCTGAATTGACAGGTGATGGAAACAAAAAGTCTGTTAGTAAATCGAgacttgatttaaaaaaagcgAAGACTTCCACAacatcaaaatctaaaaaagaaCTTAAAACTTCTACATtcaattatacgtatatagcaCCACCTAAAAATAGAATGCCTCATAGTGTaagaagaaatattaattgtctAATAAacgattctatttttaaactccCATTTGAGCAtggaTGGAAACGAGAATTAGTATACAGAACATCGGGCGAATCTGCTGTTGTTACTGAGGACAATAGAAGTGgtgatatatactattattctcCAAATGGCCAGAAACTACGATCATTACAAGAAATACaggaatatttgaatatttcatctGATAAAACTACTCTAACTATAGACAATTTCACTTTCTTAGCAAAACCGATTTTCGTGTATGATGAATCAAAAGAACGAATCAGAGatgcaaatttcaaattatatatgaatgaGACTACTGATGATATTGCTGTTCTACTTCAAAAATCTATAACACCTGAACAGCGCACACCAGTTGATTATGAATTGACAGGTGATGGAAACAAAAAGTGTGCTAGTAAaatgaaacacattttaaatatgtga
- Protein Sequence
- MELSKETSEPMEVDKPTDSPSIVHNNHVNKKKLSKSSKLTTPKFNLTSSNTRILRSAGRIKNYDIRDAIFKIPFEHGWKRELVYRTSGESGVVTRANRSADVYYYSPNGQKLKSLRDIKEQLDISSDKTSLTIESFTFVTKPIGINDKSKELIRSKYVKSFKDDTTVGVAVKPKKSKTPKQRPPFDSELTGDGNKKSVSKSRLDLKKAKTSTTSKSKKELKTSTFNYTYIAPPKNRMPHSVRRNINCLINDSIFKLPFEHGWKRELVYRTSGESAVVTEDNRSGDIYYYSPNGQKLRSLQEIQEYLNISSDKTTLTIDNFTFLAKPIFVYDESKERIRDANFKLYMNETTDDIAVLLQKSITPEQRTPVDYELTGDGNKKCASKMKHILNM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01304184;
- 90% Identity
- -
- 80% Identity
- -