Rchl017965.1
Basic Information
- Insect
- Rhogogaster chlorosoma
- Gene Symbol
- -
- Assembly
- GCA_944452905.1
- Location
- CALYCC010000103.1:20854-25187[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0021 0.32 12.5 0.4 1 23 62 85 62 85 0.97 2 13 5.6e-06 0.00086 20.6 0.2 2 23 92 113 91 113 0.97 3 13 3.9e-05 0.006 17.9 5.3 2 23 120 141 119 141 0.96 4 13 4.5e-05 0.0069 17.7 0.1 1 23 147 169 147 169 0.97 5 13 0.013 2 10.0 3.7 3 23 178 199 176 199 0.96 6 13 0.091 14 7.3 0.8 1 23 218 240 218 240 0.84 7 13 2.3 3.6e+02 2.9 2.2 2 21 247 266 246 267 0.91 8 13 2.5e-05 0.0039 18.5 1.3 1 23 910 932 910 932 0.98 9 13 1.1e-05 0.0017 19.6 1.2 1 23 939 961 939 961 0.99 10 13 3e-05 0.0045 18.3 0.1 1 23 969 992 969 992 0.97 11 13 0.00069 0.11 14.0 6.8 1 23 998 1020 998 1020 0.98 12 13 0.0026 0.41 12.1 6.8 1 23 1026 1048 1026 1048 0.98 13 13 1.6e-06 0.00025 22.3 1.1 1 23 1054 1076 1054 1076 0.98
Sequence Information
- Coding Sequence
- ATGATTGCAAACAGTGAAAAGACTGTCTTCGATTATAATAGCTCTTTCAAGAAAAGAATGGATGTCATAGGATCTGAATTAAATCGACCAGATGATCCAGGAAAAGTTATTAAACCTGACTTCCGTTTGGGCACCCAAAAAATAGAAAACAAAACTTTGGTCAGTCCTCTCGTAGTCAGACCGTTTGAATGTTACCTATGTGGTTTGGTGTTCGACAGAATTTCACAGTTCGATAACCACAGTAGAAGCGTACATGATCAAGAAAGGTCTCAAGTCTGTCAGATATGTGGTAAAGGATTTTTTAGACCAACAGATCTAAAAACTCACTTGAACATTCACTTGGGCACTAATAGATGCATGTGCAAAGTTTGCGGGAGAAAATTTAATCATGTATCTAATTTGATCAGACACAGTAGAACACACTCAGGAGTAAAACCTTACCCATGCAGTGTATGCGGTAAGAGATTTGCACAGATAAATACGTTGGCTAGACACAAAGCCATTCATAAAAGAGGAGATGAAATAATGAACTGCTGTTTCTGTGATAAAAAATATAAATCTGATAATGGTCTTAGGGAACACATGAAGAAATTACACGGCTTTACAGAGAAGTCTAATCCCGATGATATTGGCAGAATCATGAAACGTAAGCATTACTGTAAAATTTGCGGAGAGAGTTTTCAATTCGTCGAAATTCTCAGACTTCACGAAGAAACTCATCAGAATTTAAAGTCATTGGAATGCAGAAGTTGCAATCGGGAATTTCACAAACCGGATGAGATTAAAGAACATAGATGCAGAAGGCAGAAGATGGCTATTCCGAACGCAGTAAAAACCAGAAAAGTAGCCGATGAAGAATCGATTGTAACAATAATGAGGAATAAAAGCAGATCGAATTTGTCTGGAGAGAATGAAAATGTTCTCAAACAACTTCGAGGAGTCAATGAAGATTCTAAAGAGCTTAAGTCTAATTCAAATGAAATTGATACACATATAGAGAACTCGAAGATAAACGGATTGAAAGATTTAATTGATCACGAACTTGATGCCAAATTATCTAACGCTGAAATTATCAGCTCTAATAAACTGGTGGAGGATAAACAGACCAAAGAAACTATTGTTTACGTTACTACAGGACAGCTTGCTAATATGAATACGGATCAAGTAGTTGACACAGCGAGCCATTTTCTCCATCAACACTTGATGGAACTTGCTTCGGAGAATTCTTTACAAACTGAAAATATCAGCTCTCGAGACTGTGACGGGGAAAGGGTTGTATCTGAGATGATAAAGAATTGTTGGAAAGAAATTGAAATGCCGGATACTAATGATATGGAAATATGCGATAAGAGAGATGCTTCTCTAACTGCCAAGAACAATACACAGAGTATAATATACATTCATGCGTTGGAAAAAGATGGTCTGATATTTTTGAACGAACATGGGAATTTGGTTAGCAATGTGACACCTGATATTCCGCCGGAGAAGTATGTCGATATGAAAAATGACTCATCTTCAATTAAAACTATAAATTTACATAACGAGCTTGAGAACTCCCAGACTGTAAAAATCAGTCAAACTGATGCTACGAGCAAAAGATTAGCGTCTAATTCTGTTTTACATGAAAACAAAGAGAAAAATTTGAGGGAAAAAAATTATAAACACGTTAGAGCGATCAGAGGATTTAAAAATCCTAACAGCAGGAATTGTTTCAGCGAAGACAATTCAAACAGGAAACATAATCTTTCGACTGAAACCACGAATCCTTCCCTGGGATCGTCGGATAACAAAGCGCCAGCATTGAGATTAGTTCAGACAGAAAATGGGCAGCAATTTTATGAGCTAATGATACCGAATAACGGTTCAGAAAAATTCGAAAATCATGTTGAATTTGACAGAGTGTCAAGCGGAAGTGACAACTTGAGGGCTATGGAGAATGAACCTTTGATAGAATCTTTGTTGAAATTAGTAAAATTCGAAAATGGTCAACGTGTTTTGGAATTAAGTAAGAACAGTTTTTCGGATAGAACTAAAGAGCTGATAGAGCAGAAGATGGGGAAAGAGGCAGAGAATGTCGATCGAGATACTAGGGATAGTAAATTGAGTGAAACATCAGTAATGGAAAATATCGAGCAGGACGAAATGAGGGGAAAAAATAAATGTGAGAAAATTTTCTACTTGGCCCAAAATAACAAGGATAATAATATGATCGATTTCTTTGAAATAGAAACACTAGGGGAGCAAGAACAGAGCAGTTTTAACTTAGCGCCAGACGAAGCGATAGAAAATGTATCGCAAACTAGTTTTGATCATTTGGAAACGTTAGATAGAAACAAAAGTCTGGGAGACGATCAATCTCTAATAGATAATGAAAGCTGCGAGGAACTATTGGGACTTATTCAAAGCAATACTCTGAGACAAAGTGAGAAAAATAAAATTGAATCCAGAAAAAGCAGTAGAGAGGACGGTCCAATGGTCAGACTTGTGCAAAACGAAGACGGAGCACAATTTTTCGAGCTTATTAGAGGCGACTTAGAATTCGACGAGACACAAGACTTTGAGTTAGTAGAAACTAAAGATTCAGATCAAACGCGCAACCCCCAGCCTTCGAACGATGCTAAATGCTCTAAGAAATTGCAAACAGACTCCGGTTGTGCGATTAACGAAAGTACCAAGTCAGGGCTTGATATAATTCGTAAAAAAAGAACTAAGAGCAATGCGAAAAAGTACAACTGCGACGTTTGCAAGAAATCGTTTTCCAAAGGTTCAAACTACAGACAACATATCGGAACCCATTTTGCGGATAAACAAAAATTCAAGTGCAAAGAATGCGGCACTTTTTTCGCCTGGAAATCAACTCTCAACAAACATATGGCCACTCATAAAGCTGGTGGTCAACAGAAATTTGTTTGCGAAATTTGTCCAAAAGTATATACAACTTTGTCCCAAGTTAATGAACATGTGAAGAGGGATCATCTTAAGGAGCGTAATcacaagtgtctgcactgcgctaagacattcttcaagaaattcgatctcaagatacatattcgtacgcatactaaagaacgtccttacgagtgtcgggtttgctacaagagcttccatcatcagagtcacattattcgtcacgaacgaattcattccggggagagaccgtatgcttgtaatatttgcgaaaagacattcacGCAGCTAGGATCACTGAAAAATCATAGACAGAGGCATCAAGAGTTGAAAATAGATATACTAGATTATCAGATGGATGAAGACGATCCTTTGCCACGAACGGCTTTTTAG
- Protein Sequence
- MIANSEKTVFDYNSSFKKRMDVIGSELNRPDDPGKVIKPDFRLGTQKIENKTLVSPLVVRPFECYLCGLVFDRISQFDNHSRSVHDQERSQVCQICGKGFFRPTDLKTHLNIHLGTNRCMCKVCGRKFNHVSNLIRHSRTHSGVKPYPCSVCGKRFAQINTLARHKAIHKRGDEIMNCCFCDKKYKSDNGLREHMKKLHGFTEKSNPDDIGRIMKRKHYCKICGESFQFVEILRLHEETHQNLKSLECRSCNREFHKPDEIKEHRCRRQKMAIPNAVKTRKVADEESIVTIMRNKSRSNLSGENENVLKQLRGVNEDSKELKSNSNEIDTHIENSKINGLKDLIDHELDAKLSNAEIISSNKLVEDKQTKETIVYVTTGQLANMNTDQVVDTASHFLHQHLMELASENSLQTENISSRDCDGERVVSEMIKNCWKEIEMPDTNDMEICDKRDASLTAKNNTQSIIYIHALEKDGLIFLNEHGNLVSNVTPDIPPEKYVDMKNDSSSIKTINLHNELENSQTVKISQTDATSKRLASNSVLHENKEKNLREKNYKHVRAIRGFKNPNSRNCFSEDNSNRKHNLSTETTNPSLGSSDNKAPALRLVQTENGQQFYELMIPNNGSEKFENHVEFDRVSSGSDNLRAMENEPLIESLLKLVKFENGQRVLELSKNSFSDRTKELIEQKMGKEAENVDRDTRDSKLSETSVMENIEQDEMRGKNKCEKIFYLAQNNKDNNMIDFFEIETLGEQEQSSFNLAPDEAIENVSQTSFDHLETLDRNKSLGDDQSLIDNESCEELLGLIQSNTLRQSEKNKIESRKSSREDGPMVRLVQNEDGAQFFELIRGDLEFDETQDFELVETKDSDQTRNPQPSNDAKCSKKLQTDSGCAINESTKSGLDIIRKKRTKSNAKKYNCDVCKKSFSKGSNYRQHIGTHFADKQKFKCKECGTFFAWKSTLNKHMATHKAGGQQKFVCEICPKVYTTLSQVNEHVKRDHLKERNHKCLHCAKTFFKKFDLKIHIRTHTKERPYECRVCYKSFHHQSHIIRHERIHSGERPYACNICEKTFTQLGSLKNHRQRHQELKIDILDYQMDEDDPLPRTAF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01414410; iTF_01413619; iTF_01411756; iTF_01412551;
- 90% Identity
- -
- 80% Identity
- -