Tscr019496.1
Basic Information
- Insect
- Tenthredo scrophulariae
- Gene Symbol
- -
- Assembly
- GCA_963978835.1
- Location
- OZ022233.1:7421968-7425938[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0023 0.28 12.5 0.4 1 23 62 85 62 85 0.97 2 13 6.2e-06 0.00077 20.6 0.2 2 23 92 113 91 113 0.97 3 13 3.6e-05 0.0044 18.2 4.9 2 23 120 141 119 141 0.96 4 13 2.7e-05 0.0034 18.5 0.1 1 23 147 169 147 169 0.97 5 13 0.0048 0.6 11.5 4.6 3 23 178 199 178 199 0.97 6 13 0.1 12 7.3 0.8 1 23 218 240 218 240 0.84 7 13 0.79 98 4.5 2.3 1 20 246 265 246 267 0.93 8 13 7e-05 0.0087 17.2 1.5 1 23 912 934 912 934 0.98 9 13 0.00011 0.013 16.7 0.8 1 23 941 963 941 963 0.98 10 13 3.2e-05 0.004 18.3 0.1 1 23 971 994 971 994 0.97 11 13 0.00076 0.094 14.0 6.8 1 23 1000 1022 1000 1022 0.98 12 13 0.0029 0.36 12.1 6.8 1 23 1028 1050 1028 1050 0.98 13 13 1.8e-06 0.00022 22.3 1.1 1 23 1056 1078 1056 1078 0.98
Sequence Information
- Coding Sequence
- atgattaCAACCAGTGAAAAGACTGCCTTTGATTATAACAACTCTTTCAAGAACAGCACCTATGTCATAGGATCTGAATTAAATTGCTCAGAGGATCCTGTAGAAGATATTAGACCCGACTCTCATCTAGGAATCCAAAAATTACAAAACAAAACTTTGATCATTCCCAAGGTAGTTAGACCGTTCGAATGTTATCTATGCGGTTTAGTGTTCGATAGAATTTCGCAGTTCGATAATCACAGTAGAAGCGTACATGATCAAGAAAGATCTCAAGTTTGTCAGATATGTGGTAAAGGATTTTTTAGACCAACAGATCTTAAGACTCACTTGAACATTCACTTGGGTACTAATAGATGCATGTGCAATGTTTgtggaagaaaatttaatcatatATCTAATTTGATCAGACACAGTAGAACACACTCAGGAGTGAAACCTTACCCATGCAGTATATGCGGTAAAAGATTTGCACAGATAAATACATTGGCTAGACACAAAGCTATTCATAAAAGAGGAGATGAAATAATGGGCTGTTgtttttgtgataaaaaatataaatctaaTAACGGTCTTAGAGAACATATGAAGAAATTACACGGCTTTACAGAGAAATCTAATTGTGATGAtaaagggaaaataattaaacgcAAACATTACTGTAAAATTTGCGGTGAGAGTTTTCAATTCGTTGAAATTCTTAGACTTCACGAAGAAACACATCggaatttaaaatcattcgaaTGTAGGAGTTGCGATCAGaAATTTCATAAACCGGATGAGATTAAAGAACATAGATGCGGAAGGCAGAAGAATGCTATACCAAACACAGCTAAGACCAAAAAGGTAGCTGATGAAGAATCGATTGTAACAGTAACAAGGGATAAAAGTAGATCGAATTTATCTGGAGGAAATGAAAGCGTTCTTACACAACTTCGAGGAATCAATGAAGATTCTAAAGAGATTAGGACGTCTAGTTTAGACGAAAGTCTAGAAAAGTCTAAAATAAATGGACTGAAAAATGTTGTCGATCATGAAATGATCGGCGCTAATAAACTGGCAGATGATAAACAGACCAAGGAAACTATTGTTTATGTTACAACCGGACAGCTTGCTAATATGAATACGGAACAAGTAGTTGATACAGCGAatcattttcttcatcaaCACTTGATGGAACTTGCGTCTGAAAATACTTCACAAACTGAAAATATCGGCTTGAGAGATTGTGATGGAGAAACTGTTGTATCTgagatgataaataattgttggaaagaaattgaaatgcCATATGTGAATGATACGGAGCTATGCGATAAGAGAGATTCTTATTCAACTACCAAGAATAATACACAGAGTATAATCTACATACATGCATTGGAAAAAGATGGTCTTATATTTTTAAACGACCATGGCAGCTTAGTTAGCAATTTTACGCCTGAGATTACGCCAGAAAAGTACATCGATACGAAACATGACTCTTCTTCAATTAAAACTTTGAGCTTGCAGAACGAGCTTGAGAATTCCCAGACTACTACGAGTAGAAGATTATCCTCTAACTCTGTCTTACATGAAAACAAGGACAAGAATTTTagggaaaaaaatcataaacaCGTTAGAGGGATTAGAGGATTTAAAAATCATAACAGTAAGAATTATTTTaacgaagaaaattcaaacagAAATCATAATTTTCCAGTTGAAACGACGAACCCTCTCCTAACTAATAACATATTTAAAGAACCGCTAGGTAATAATACTGATAAAGTTAACGCAGCTATCGGTAAATCGTCTGATAACAGAGAGCCAGCGTTGCGATTAGTCCAGACAGAAAACAGCCAGCAATTTTATGAATTAATGATAACAAATAACAGTTcagaaaagtttgaaaattcttttgaaTATGACAAAATGTTAAACGTAGGTGAAAATTTTAGGGCTACGGAGAACGAGCCTGTAATAGAATCTTTGTTAAAATTAGTCAAGTTAGAAAATGGTCAACGTGTTTTGGAATTGACTAAGAGCAGTTTGTCGGATAGAACTAAAGAGTTGATAGAACTCAAGATGGAAAAAGAGGTCGAAGGTATTGACAAAGATACTAGGCATAGTAAATTAGGCCAAAAATCATtggaaaatattgaacaaGACGAAATGAGGAGAAAGAataaatgtgagaaaattttctacctgGCTCAAAACAACAAGGATAATAATATGATAGatttctttgaaatagaaACACTAGGAGAGCAAGAACAGAGCAGTTTTAACTTGGCGTCTGACGAAGTGATGGAAAATGTATCGCAAACTAGTTTCGATCATTTAGAAACGTTGGACAAAAACAAGAGTCTGGGGAACGACCAATCCCTGATAGATAATGAAAGCTGCGAAGAGCTGTTAGGGCTTATTCAAAGCAATACTCTGAGacagaatgagaaaaataaaattgaatctaCAAAAAGTAGTAGAGAAGATGGACCGATGGTCAGACTAGTACAGAACGAAGACGGCGCACAATTTTTCGAGCTCATTAGAGGCGATTTAGAATTCGATGAGACACAAGACTTTGAGTTAGTAGAAAGAAACGAATCTAATGAAACGCACAATGCCCagctttcgaaaaattctgaatgcTCAAAGAAATTTCACCTAGATTCTGGTTGTACAATTAACGATAGTACCAAGTTGGGGTCTGAtataaatcgtaaaaaaagaaccaaaaacAATGCGAAAAAGTACAACTGCGATGTTTGTAAGAAATCATTTTCGAAGGGTTACAACTACAGACAACATATCGGAACCCATTTTGcagataaacaaaaattcaagtgCGAAGAATGCGGAACTTTTTTTGCCTGGAAATCTACGCTTAATAAACATACGGCGACTCATAGAGCTGGTGGACAGCAGAAATTTGTTTGCGAAATTTGTCCAAAAGTATATACAACTTTGTCCCAAGTGAATGAACATGTGAAGAGGGATCATCTCAAGGAGCGTAATCACAAGTGTCTACACTGCGCTAAGACATTCTTTAAGAAATTTGATCTAAAAATACATATTCGTACGCACACCAAAGAACGTCCTTACGAGTGTCGGGTTTGTTACAAGAGCTTCCATCATCAGAGTCACATTATTCGTCATGAACGAATTCACTCAGGGGAGAGACCGTACGCTTGTAATATTTGCGAAAAGACATTCACACAGTTGggatcattgaaaaatcataGACAGAGGCATCAAGAGTTGAAAATAGATATACTAGATTATCAGATGGATGAAGACGATCCTGTGCCACGAACAACTTTCTAG
- Protein Sequence
- MITTSEKTAFDYNNSFKNSTYVIGSELNCSEDPVEDIRPDSHLGIQKLQNKTLIIPKVVRPFECYLCGLVFDRISQFDNHSRSVHDQERSQVCQICGKGFFRPTDLKTHLNIHLGTNRCMCNVCGRKFNHISNLIRHSRTHSGVKPYPCSICGKRFAQINTLARHKAIHKRGDEIMGCCFCDKKYKSNNGLREHMKKLHGFTEKSNCDDKGKIIKRKHYCKICGESFQFVEILRLHEETHRNLKSFECRSCDQKFHKPDEIKEHRCGRQKNAIPNTAKTKKVADEESIVTVTRDKSRSNLSGGNESVLTQLRGINEDSKEIRTSSLDESLEKSKINGLKNVVDHEMIGANKLADDKQTKETIVYVTTGQLANMNTEQVVDTANHFLHQHLMELASENTSQTENIGLRDCDGETVVSEMINNCWKEIEMPYVNDTELCDKRDSYSTTKNNTQSIIYIHALEKDGLIFLNDHGSLVSNFTPEITPEKYIDTKHDSSSIKTLSLQNELENSQTTTSRRLSSNSVLHENKDKNFREKNHKHVRGIRGFKNHNSKNYFNEENSNRNHNFPVETTNPLLTNNIFKEPLGNNTDKVNAAIGKSSDNREPALRLVQTENSQQFYELMITNNSSEKFENSFEYDKMLNVGENFRATENEPVIESLLKLVKLENGQRVLELTKSSLSDRTKELIELKMEKEVEGIDKDTRHSKLGQKSLENIEQDEMRRKNKCEKIFYLAQNNKDNNMIDFFEIETLGEQEQSSFNLASDEVMENVSQTSFDHLETLDKNKSLGNDQSLIDNESCEELLGLIQSNTLRQNEKNKIESTKSSREDGPMVRLVQNEDGAQFFELIRGDLEFDETQDFELVERNESNETHNAQLSKNSECSKKFHLDSGCTINDSTKLGSDINRKKRTKNNAKKYNCDVCKKSFSKGYNYRQHIGTHFADKQKFKCEECGTFFAWKSTLNKHTATHRAGGQQKFVCEICPKVYTTLSQVNEHVKRDHLKERNHKCLHCAKTFFKKFDLKIHIRTHTKERPYECRVCYKSFHHQSHIIRHERIHSGERPYACNICEKTFTQLGSLKNHRQRHQELKIDILDYQMDEDDPVPRTTF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01303661;
- 90% Identity
- -
- 80% Identity
- -