Tmes037998.1
Basic Information
- Insect
- Tenthredo mesomela
- Gene Symbol
- -
- Assembly
- GCA_943736035.1
- Location
- CALSEY010000878.1:41178-44962[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.003 0.62 12.0 1.2 1 23 62 85 62 86 0.96 2 13 5.1e-06 0.0011 20.7 0.2 2 23 92 113 91 113 0.97 3 13 3e-05 0.0061 18.3 4.9 2 23 120 141 119 141 0.96 4 13 2.3e-05 0.0047 18.6 0.1 1 23 147 169 147 169 0.97 5 13 0.0012 0.26 13.2 3.7 3 23 178 199 176 199 0.96 6 13 0.083 17 7.4 0.8 1 23 218 240 218 240 0.84 7 13 1.7 3.4e+02 3.3 1.7 2 20 247 265 246 267 0.91 8 13 5.8e-05 0.012 17.4 1.5 1 23 830 852 830 852 0.98 9 13 8.9e-05 0.018 16.8 0.8 1 23 859 881 859 881 0.98 10 13 2.7e-05 0.0056 18.4 0.1 1 23 889 912 889 912 0.97 11 13 0.00017 0.036 15.9 4.9 1 23 918 940 918 940 0.98 12 13 0.0024 0.5 12.3 6.8 1 23 946 968 946 968 0.98 13 13 1.5e-06 0.00031 22.4 1.1 1 23 974 996 974 996 0.98
Sequence Information
- Coding Sequence
- ATGATTACAACCAGTGAAAAGACTGCCTTTGATTATAACAATTCTTTCAAGAAAAAAACGTATGTCATAGGATCTGAATTAAATAGATCAGAGGATCCTGTAGAAGATATTAGACCGGACTCTGATTTAGGAATCGAAAAATTAGATACCAAAACTTTGATTATTCCCAAGGTAGTTAGACCATTTGAATGTTATCTATGCGGTTTAGTGTTCGACAGAATTTCACAGTTCGATAATCACAGTAGAAGCGTACATCATCAAGAAAGATCTCAAGTTTGTCAGATATGTGGTAAAGGATTTTTTAGACCAACAGATCTTAAAACTCACTTGAACATTCATTTGGGTACTAATAGATGCATGTGCAATGTTTGCGGAAGAAAATTTAATCATATATCTAATTTGATAAGACACAGTAGAACACACTCAGGAGTGAAACCTTACCCGTGCAGTATATGCGGTAAAAGATTTGCACAGATAAATACATTGGCTAGACACAAAGCTATTCATAAAAGAGGAGATGAAATAATGGACTGTTGTTTTTGTGATAAAAAATATAAATCTAATAACGGTCTTAGAGAACATATGAAGAAATTACACGGCTTTACAGAGAAATCTAACAGCGATGATAAAGGGAGAATAATTAAACGTAAACATTACTGTAAAATTTGTGGCGAGAGTTTTCAATTCGTTGAAATTCTTAGACTTCACGAAGAAACTCATCGAAATTTAAAAACATTGGAATGTAGAAGTTGCGATCAGAAATTTCATAAGCCTGATGAGATCAAAGAACATAGATGCGGAAGGCAGAAGTCGGCTATACCAAATGCAGCGAAAACGAAAAAAGTAGCTAATGAAGAATCGATTGTAACAGTAACGAGGGATAAAAGTAGATCGAACTTATCTGCAGGAAATGAAAGTGTGCTTACACAACTTCGAGGAATCAATGAAGATCCTAAAGAGATTAGGTCGTCTAGTTCGGACGAAAGTCTAGAGAAGTCAAAAATAAATGGACCGAAAAATGTTGTCGATCATAAACTTGATGCTAATAAATTGACGGAGGATAAACAGACCAAGGAAACTATTGTTTATGTTACAACCGGACAGCTTGCTAATATGAATACGGAACAAGTAGTTGATACAGCGAATCATTTTCTTCATCAACACTTGATGGAACTTGCTTCTGAAAATTCTTCACAAACTGAAAATATCAATTTAAGAGACTGTGATGGAGAAACTGTTGTATCTGAGATGATAAATAATTGTTGGAAAGAAATTGAAATGCCATATGTAAATGATACGGAAATATGTGATAAGAGAGAGAATTTAAATACCAAGAATAATACACAGAGTATAATCTACATACATGCGTTGGAAAAAGATGGTCTTATATTCTTAAACGACAATGGTAACTTAGTTAGCAATTTTACGCCTGATATTACACCAGAGAAGTATGTCGATATGAAACATGACTTGTCTTCAATTAGAACTTTGAGCTTACATAACGAGCTTGAGAACTCCCAGACTGTAAAAATTGCTCAAAATGATACTACGAGTAAAAGATTATCCTCTTATTGTGGAAATTTGAGGGAAAAAAATCATAAACACGTTAGAGCGATTAGAGGATTTAAAAATCATAACAATAGGAATTATTGTAGCGAAGAAAATTCGAGCAGAAATAATAAGTTTCCAGTTGAGACGACCAATCCTTTCCTAACTAATAATATATTTAAAGAACTGCTGGGTATCAATACTGATAAAGTTAACGCAGCTATTGGCAAATCGGATAGAACTAAAGAGTTGATAGAACTGAAGATAGAAAAAGGGGTAGAAGATGGTGACAAAGATACTAGGAATAGCAAATTAGGCGAAAGATTAATATCGGAAAATATTGAGCAAGACGAAATGAGAGGAAAGAATAAATGTGAGAAAATTTTCTACCTGGCTCAAAACAACAAGGATAATAATATGATAGATTTCTTTGAAATAGAAACGCTAGGAGAGCAAGAACAGAGCAGTTTTAACTTAGCGTCTGACGAAGTGATGGAAAATGTATCCCAAACTAGTTTTGACCATTTGGAAACGTTGGAGAAAAACAAGAGTCTGGGTAACGACCAATCCCTGATAGATAATGAAAGCTGCGAAGAATTATTGGGACTTATTCAAAGCAATACCCTGAGACAGAATGAGAAAAACAAAATTGAATCTACAAAAAGTAGTAGAGAAGATGGTCCGATGGTCAGATTAGTACAAAATGAAGATGGAGCACAATTTTTCGAGCTTATTAGAGGCGATTTAGACTTCGATGAGACACAAGACTTTGAGTTAGTGGAAAGAAACGAATCTGATGAAACACACAATGCACAGCTTTCAAAAAATTCTAAATGCTCAAAGAAATTTCACCTAGATTCTGGTTGTACAATTAACGATACCAAGTCGGGATCGGATACATCAAATCGTAAAAAAAGAACTAAAAACAATGCGAAAAAGTACAACTGCGATGTTTGTAAGAAATCATTTTCAAAGGGTTACAACTACAGACAACATATCGGAACCCATTTTGCAGATAAACAAAAATTCAAGTGCGAAGAATGCGGCACTTTTTTTGCCTGGAAATCTACGCTTAATAAACATACCGCAACTCATAGAGCCGGCGGACAACAGAAATTTGTTTGCGAAATTTGTCCAAAAGTATATACGACTTTGTCCCAAGTGAATGAACATGTGAAGAGGGATCATCTTAAGGAGCGTAATCACAAGTGTCTCTActgcgccaagacgttctttaaaaaatttgatctaaaaatacacattcgtacacataccaaggaacgaccttacgagtgtcgggtttgttacaagagcttccatcatcagagtcacattattcgtcatgaacgaattcactcaggggagagaccgtacgcttgtaatatttgcgaaaagacattcacACAACTGGGATCATTGAAAAATCATAGACAGAGGCATCAAGAGTTAAAAATAGATATACTAGATTATCAGATGGATGAAGACGATCCTTTGCCACGAACGACTTTTTAG
- Protein Sequence
- MITTSEKTAFDYNNSFKKKTYVIGSELNRSEDPVEDIRPDSDLGIEKLDTKTLIIPKVVRPFECYLCGLVFDRISQFDNHSRSVHHQERSQVCQICGKGFFRPTDLKTHLNIHLGTNRCMCNVCGRKFNHISNLIRHSRTHSGVKPYPCSICGKRFAQINTLARHKAIHKRGDEIMDCCFCDKKYKSNNGLREHMKKLHGFTEKSNSDDKGRIIKRKHYCKICGESFQFVEILRLHEETHRNLKTLECRSCDQKFHKPDEIKEHRCGRQKSAIPNAAKTKKVANEESIVTVTRDKSRSNLSAGNESVLTQLRGINEDPKEIRSSSSDESLEKSKINGPKNVVDHKLDANKLTEDKQTKETIVYVTTGQLANMNTEQVVDTANHFLHQHLMELASENSSQTENINLRDCDGETVVSEMINNCWKEIEMPYVNDTEICDKRENLNTKNNTQSIIYIHALEKDGLIFLNDNGNLVSNFTPDITPEKYVDMKHDLSSIRTLSLHNELENSQTVKIAQNDTTSKRLSSYCGNLREKNHKHVRAIRGFKNHNNRNYCSEENSSRNNKFPVETTNPFLTNNIFKELLGINTDKVNAAIGKSDRTKELIELKIEKGVEDGDKDTRNSKLGERLISENIEQDEMRGKNKCEKIFYLAQNNKDNNMIDFFEIETLGEQEQSSFNLASDEVMENVSQTSFDHLETLEKNKSLGNDQSLIDNESCEELLGLIQSNTLRQNEKNKIESTKSSREDGPMVRLVQNEDGAQFFELIRGDLDFDETQDFELVERNESDETHNAQLSKNSKCSKKFHLDSGCTINDTKSGSDTSNRKKRTKNNAKKYNCDVCKKSFSKGYNYRQHIGTHFADKQKFKCEECGTFFAWKSTLNKHTATHRAGGQQKFVCEICPKVYTTLSQVNEHVKRDHLKERNHKCLYCAKTFFKKFDLKIHIRTHTKERPYECRVCYKSFHHQSHIIRHERIHSGERPYACNICEKTFTQLGSLKNHRQRHQELKIDILDYQMDEDDPLPRTTF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01303661;
- 90% Identity
- -
- 80% Identity
- -