Rchl020433.1
Basic Information
- Insect
- Rhogogaster chlorosoma
- Gene Symbol
- -
- Assembly
- GCA_944452905.1
- Location
- CALYCC010000126.1:903625-908082[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.13 20 6.8 2.9 1 23 309 331 309 331 0.97 2 19 0.035 5.4 8.6 0.5 2 23 366 387 365 387 0.94 3 19 0.0033 0.5 11.9 1.3 1 23 434 456 434 456 0.97 4 19 0.82 1.3e+02 4.3 0.2 2 23 460 481 459 481 0.94 5 19 6.2e-05 0.0096 17.3 1.8 2 23 527 548 526 548 0.97 6 19 0.00019 0.029 15.7 3.8 3 23 555 575 553 575 0.96 7 19 0.00053 0.081 14.3 0.8 1 21 581 601 581 605 0.92 8 19 0.00085 0.13 13.7 2.4 1 23 663 685 663 685 0.97 9 19 0.00019 0.029 15.8 4.8 1 23 716 738 716 738 0.97 10 19 0.00025 0.039 15.4 0.7 1 20 743 762 743 764 0.94 11 19 0.00043 0.066 14.6 0.5 2 23 775 796 775 796 0.97 12 19 1.1e-05 0.0018 19.6 0.7 2 23 835 856 834 856 0.97 13 19 2.3e-05 0.0036 18.6 1.6 1 23 861 883 861 883 0.95 14 19 0.00053 0.082 14.3 3.0 1 23 889 911 889 911 0.98 15 19 4.1e-06 0.00063 21.0 0.4 1 23 927 949 927 949 0.95 16 19 3.3e-07 5.1e-05 24.4 0.6 1 23 955 977 955 977 0.99 17 19 3.6e-05 0.0056 18.0 0.2 1 23 983 1005 983 1005 0.97 18 19 0.00013 0.021 16.2 4.1 1 23 1011 1033 1011 1033 0.96 19 19 0.0095 1.5 10.4 0.4 1 20 1039 1058 1039 1060 0.89
Sequence Information
- Coding Sequence
- ATGGACGCCGAAGAGGTAAATACGTCGGAACCTCCGCAAAACGATGAAAATATATCAGCGGTTGTTGAAATATGTCGAGTGTGTTTACTCGAGGGTGTAGAGATGAGAGATCTCTTTTCGGAAAATGATGTCGCATCGTTATCCACAAAAGCTATGAGCTTTACGAACGCTAAGATGATACCGGGGGACGGATTACCTGGACAAGTGTGTGCCTCCTGCGCTGAGAAACTAGATTCCGCCTATGAATTCAAGCTCCAAGTGGAGCACGCCGACAATATTCTGAGAGAGAAATACGTGTCGTTGAGTATAAAAGAGGAATTATTTTTCAACGAGGTGGAAGTAGACTTGGAAACTAATCAAACCATAGAACAAAATCCGGACCAATTAACAGACGCTCATATTCAGTTGAGCACAGAGTCGGATCAAGAGGACCACGGGGATGGAGAGGCGGAATCCTCACTGTTAAAAGACAATCTGGCACTTTTACAGGTTGAAAAATTGGCCGAAGCTGAACCCGAGAGTCTAGAAATGGCCGAAACTCTGCCGGAATCAATAGAAGAGATAAGAATCAATCCTAGTAGCATCGTGGCCCAAGAACATGGCTATGGAGCGCAGCAAAAGTCGGTCGAAGAGGAAGAAGAACTGCCTGTGGCAGAAGCTTCCAACAGTCAAGAAGGCGTAAATTATGAACAAGAGAGGGAGGATGGTAGAGAAGAATTTTCAGAGCACAAAATGATTATTGAAAACGTGGAGAGCCTGGCTTCCGAGCAATCGATGCAAATCGAAACTCGTAAAAGCAAACGTAAGTCTGCTCGGAGAGTACCGATCCTCGATCATGACTCGGACGAAGACAACTACTTTGAGAATTTGAACTTGAGCTCTCGGCTGAAACAGAGCCAGTCGGACAAAGCTGAGAAGGTTTATTACATGTGCTACATTTGCGACAAGCACTTTTTGGCCAAGGGAGTATTGAAGGAACACATGCACTCACACGACGAAGTTAGGAAAGTTATGTCGTTGGTAAAGGTGCCTGAGAAGAGTGTGAAAGTCGCGAGTTCTACTGCAAAGCATTCCCCGTCTGGAAAGCAGCCTAACAAATGCCCTTACTGCGGAAAAGAATATTTGTACATTATTTCGTACAACAAACATCTCAAGCAGCACGAAAATGATAAAGAAGAATCAAAGGTAGAGCCTATGCCTCTGGAAGTCTCTTTTCACGAGGACGATAACACTCTGGATTTTGATAACTACGATAACAGTTACGATTCGGATCCGGATTTGAACGTAGACAGCGGGGAACACACTTGCGATAAATGTCAGGCGGTATTCAACGCCAAAAAAGCACTCGACAAACACATGGTTAAACACGAAATTCTTAAATGCAGTGTTTGCAATGAAGAATCCGAGGGATTAGAGGCGTTCAAAAATCACAGATCTGAACACGTTGCTGAGGGCGTATTGACCGAAGAAGATCTGAAAGAAGACATCAAACAAGTTGTTCAATTGCAAGAAAGTACAGAAGCAGATGAGGCTGTTCGAGCTCGTAGAAAAACTCGAAATTCGGATGTGAAGGGGCTGCGATGTCCTAAATGTCCTATGATATATTCTCACAAAAAGTCTTTGTCAAGGCATCTTGAAACTCACACGGGTACAACGTATGGTTGTAAATCTTGCAGCCAACAATTCACTCGCAAGGATCACCTGAGAAGACATATGGAACAGCACGGTAGAATGAAATCCTTCAAATGCACCCAGTGCAACAAGACCTTTGGCAATGAATTGACTCTGAGAAATCATCTGATAGCAACTAATCACAAGACTATTATGCGCGGGGAGGAGTACGACCCTAATAAACGGCTGAAGCGAGTCGCTGCTAAGGAGGCTCAGAAGATTATTGACAAAATTAAAACCGAGGACAACGCGGATGACAACTATAGCAGCGACAGCAGAGATACACCGGAGAAAAAAATATACGAGAAGAAAGAATACGAGTGTGCAAGCTGCAACAGAAAATGCGCTTCTAAACAGTCTTTGACTAAACATATGGAGCTTCATATTAAGGACGAAAAGAGAGACAAGGAAATGAACCGTGGGTCGGACGACGACTCGGATTTTGACGGCGGGCTGGACTGGCCTATGGACAATCACGAATGTTCAACTTGCAAAAAGAGATATAGCACTAAGAAATCTTTACTGAGACATCAGCTGCTGCACGAAGAGCCGAATTTCGAATGCGATATATGCAATGTGAAATTCTATCGTAAGGACAAGCTGAAAGCACACTACGACAAATGTTCGGAAAAGAATCCGGACCAAGTTAGAAAGTGCAATATTTGCGGGGACAGCTTCGAGAACAATGATATGCTGAAGGAACACAGGGCTAAACATGTCACCGAGGGGATTCTGACCGAGGAAGATCTTAGAGACATTGAACCACAGGCGGAGGAGAGGAGAGCTGGTGAAAAAATAACCAGGAAAAGGAGAACTGATATCGTGGGACTGGAGTGCACGGAGTGTAACAAGAGATACACGTCTAGGAAGGGGCTCTTACGTCACATACAGGTTCACGAGGGCAAGAAATACCTCTGCGATATATGCCCGAAGAAATTTTACAGGCGAGAACACCTCAAGATACACGTAGCCAAACACAATATGATTAAACCTCACAAATGCGATCGTTGTACCAAACGCTTTGCCAAAGAAGAGCAGCTGATAAATCACCTTTCCAAACACGATAGGAATTTTAAGAAGAACAAAGAAACCGATAGCTCAAAGAGATTCTTGTGCGAAATTTGCTCGAAAAGCTTTACTCAGTCGACTACACTCATCGCTCACTTGCGGGCTCATAACGGAATAAAACCCTATGTTTGCGAAGTCTGCTCTCGGCCTTTTACCACTAATGCTTATCTCAAAATGCACATGAGAACGCATACTCAGGAGAGACCTTACATTTGCCAGTACTGTTCCAGGGCCTTTGCAAGGGCCGATACCTTGGCGAATCATCTCACCTCGCACACGGGGGAGGCGAAATATCACTGCAAATATTGTCCCAAGAATTTCAGAAGGCTTAAGTCGCTGAAAGAACATGTCTTCATTCATACAGGTCAAAGACCATACGCCTGTCCTACGTGTGACCGGAGGTTTAACAACAACGGAAGTCGATACGCACACAGTAAAAGATGCAAGCAAAATTTATTGCAGAATCAAAACAGGGGACAAAATTCTGGCGCTAATCAGGGGAGAATCCACGCCGGTAATCAGATCCAAACTATCAAGCCACAGAGCGTTAAAACTATAACCATTACTAGGCAAGGGGATGGTGTTTCTGCACAACAAGTTATGCAGCATCAAGAAATTCTGATGCCTTTAATTCTACCGTTGACTGTTACGTTGGCTGACGTAGGAGAGGAAGTCATTCTTCCTGAGGGTACGAAAATTTTCACAACTTCGTAA
- Protein Sequence
- MDAEEVNTSEPPQNDENISAVVEICRVCLLEGVEMRDLFSENDVASLSTKAMSFTNAKMIPGDGLPGQVCASCAEKLDSAYEFKLQVEHADNILREKYVSLSIKEELFFNEVEVDLETNQTIEQNPDQLTDAHIQLSTESDQEDHGDGEAESSLLKDNLALLQVEKLAEAEPESLEMAETLPESIEEIRINPSSIVAQEHGYGAQQKSVEEEEELPVAEASNSQEGVNYEQEREDGREEFSEHKMIIENVESLASEQSMQIETRKSKRKSARRVPILDHDSDEDNYFENLNLSSRLKQSQSDKAEKVYYMCYICDKHFLAKGVLKEHMHSHDEVRKVMSLVKVPEKSVKVASSTAKHSPSGKQPNKCPYCGKEYLYIISYNKHLKQHENDKEESKVEPMPLEVSFHEDDNTLDFDNYDNSYDSDPDLNVDSGEHTCDKCQAVFNAKKALDKHMVKHEILKCSVCNEESEGLEAFKNHRSEHVAEGVLTEEDLKEDIKQVVQLQESTEADEAVRARRKTRNSDVKGLRCPKCPMIYSHKKSLSRHLETHTGTTYGCKSCSQQFTRKDHLRRHMEQHGRMKSFKCTQCNKTFGNELTLRNHLIATNHKTIMRGEEYDPNKRLKRVAAKEAQKIIDKIKTEDNADDNYSSDSRDTPEKKIYEKKEYECASCNRKCASKQSLTKHMELHIKDEKRDKEMNRGSDDDSDFDGGLDWPMDNHECSTCKKRYSTKKSLLRHQLLHEEPNFECDICNVKFYRKDKLKAHYDKCSEKNPDQVRKCNICGDSFENNDMLKEHRAKHVTEGILTEEDLRDIEPQAEERRAGEKITRKRRTDIVGLECTECNKRYTSRKGLLRHIQVHEGKKYLCDICPKKFYRREHLKIHVAKHNMIKPHKCDRCTKRFAKEEQLINHLSKHDRNFKKNKETDSSKRFLCEICSKSFTQSTTLIAHLRAHNGIKPYVCEVCSRPFTTNAYLKMHMRTHTQERPYICQYCSRAFARADTLANHLTSHTGEAKYHCKYCPKNFRRLKSLKEHVFIHTGQRPYACPTCDRRFNNNGSRYAHSKRCKQNLLQNQNRGQNSGANQGRIHAGNQIQTIKPQSVKTITITRQGDGVSAQQVMQHQEILMPLILPLTVTLADVGEEVILPEGTKIFTTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00719614;
- 90% Identity
- iTF_01414385;
- 80% Identity
- -