Basic Information

Insect: Rhodophaea formosa
Gene Symbol: -
Assembly: GCA_963082605.1
Location: OY720207.1:20115509-20125400[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 28 0.00016 0.013 16.8 2.7 1 23 206 228 206 228 0.99

2 28 0.00013 0.011 17.1 0.5 2 22 265 285 264 285 0.93

3 28 1.4e-05 0.0012 20.1 0.4 2 23 317 339 316 339 0.96

4 28 0.0085 0.69 11.4 0.3 1 23 388 411 388 411 0.96

5 28 0.0058 0.47 11.9 0.2 1 23 426 448 426 448 0.96

6 28 5e-05 0.0041 18.4 3.8 1 23 486 509 486 509 0.97

7 28 0.00065 0.053 14.9 3.7 2 23 551 573 550 573 0.96

8 28 0.00083 0.068 14.5 0.5 1 23 623 646 623 646 0.97

9 28 0.00077 0.063 14.6 0.2 1 23 703 725 703 725 0.97

10 28 0.022 1.8 10.1 4.7 2 23 737 758 736 758 0.96

11 28 0.92 75 5.0 1.4 2 23 770 791 769 791 0.94

12 28 0.0041 0.34 12.3 1.0 1 23 801 823 801 823 0.98

13 28 0.32 26 6.4 7.0 1 23 852 874 852 874 0.95

14 28 0.0012 0.096 14.1 3.2 1 23 885 907 885 907 0.97

15 28 0.00023 0.019 16.3 0.5 1 23 915 937 915 937 0.97

16 28 0.00063 0.051 14.9 0.8 2 23 957 979 956 979 0.97

17 28 0.26 21 6.7 0.4 1 23 997 1019 997 1019 0.93

18 28 0.13 10 7.7 3.7 1 23 1026 1048 1026 1048 0.97

19 28 0.0028 0.23 12.9 2.1 2 23 1059 1081 1058 1081 0.95

20 28 0.0063 0.51 11.8 0.1 2 23 1104 1125 1103 1125 0.95

21 28 0.0092 0.75 11.2 1.5 2 23 1206 1227 1205 1227 0.95

22 28 4.5 3.7e+02 2.8 5.2 5 23 1237 1255 1235 1255 0.94

23 28 0.015 1.2 10.6 0.8 2 23 1266 1288 1265 1288 0.94

24 28 0.39 32 6.1 2.3 2 23 1305 1323 1305 1323 0.89

25 28 0.38 31 6.1 2.7 2 21 1327 1346 1326 1347 0.93

26 28 0.58 47 5.6 0.9 2 23 1396 1417 1395 1417 0.93

27 28 0.012 1 10.8 2.5 2 23 1428 1450 1427 1450 0.97

28 28 0.056 4.6 8.8 4.4 2 21 1488 1507 1487 1508 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	28	0.00016	0.013	16.8	2.7	1	23	206	228	206	228	0.99
2	28	0.00013	0.011	17.1	0.5	2	22	265	285	264	285	0.93
3	28	1.4e-05	0.0012	20.1	0.4	2	23	317	339	316	339	0.96
4	28	0.0085	0.69	11.4	0.3	1	23	388	411	388	411	0.96
5	28	0.0058	0.47	11.9	0.2	1	23	426	448	426	448	0.96
6	28	5e-05	0.0041	18.4	3.8	1	23	486	509	486	509	0.97
7	28	0.00065	0.053	14.9	3.7	2	23	551	573	550	573	0.96
8	28	0.00083	0.068	14.5	0.5	1	23	623	646	623	646	0.97
9	28	0.00077	0.063	14.6	0.2	1	23	703	725	703	725	0.97
10	28	0.022	1.8	10.1	4.7	2	23	737	758	736	758	0.96
11	28	0.92	75	5.0	1.4	2	23	770	791	769	791	0.94
12	28	0.0041	0.34	12.3	1.0	1	23	801	823	801	823	0.98
13	28	0.32	26	6.4	7.0	1	23	852	874	852	874	0.95
14	28	0.0012	0.096	14.1	3.2	1	23	885	907	885	907	0.97
15	28	0.00023	0.019	16.3	0.5	1	23	915	937	915	937	0.97
16	28	0.00063	0.051	14.9	0.8	2	23	957	979	956	979	0.97
17	28	0.26	21	6.7	0.4	1	23	997	1019	997	1019	0.93
18	28	0.13	10	7.7	3.7	1	23	1026	1048	1026	1048	0.97
19	28	0.0028	0.23	12.9	2.1	2	23	1059	1081	1058	1081	0.95
20	28	0.0063	0.51	11.8	0.1	2	23	1104	1125	1103	1125	0.95
21	28	0.0092	0.75	11.2	1.5	2	23	1206	1227	1205	1227	0.95
22	28	4.5	3.7e+02	2.8	5.2	5	23	1237	1255	1235	1255	0.94
23	28	0.015	1.2	10.6	0.8	2	23	1266	1288	1265	1288	0.94
24	28	0.39	32	6.1	2.3	2	23	1305	1323	1305	1323	0.89
25	28	0.38	31	6.1	2.7	2	21	1327	1346	1326	1347	0.93
26	28	0.58	47	5.6	0.9	2	23	1396	1417	1395	1417	0.93
27	28	0.012	1	10.8	2.5	2	23	1428	1450	1427	1450	0.97
28	28	0.056	4.6	8.8	4.4	2	21	1488	1507	1487	1508	0.95

Sequence Information

Coding Sequence: ATGGCTCTCAAACTCGGAAAATGCAGGCTCTGCCTGAAGCTGGGGGACTTTTACTCGATATTTACGGTGGACAATGCCCTGCAGCTCGCGGAGATGGTGATGGAATGCACGAGGGTCAAGGTGTACGAAGGAGATGGGCTACCCGACAAGATCTGCACGGAGTGCGTGCAGAAGTTAAGCAGCGCGTATATCTTCAAGCAGCAGTGTGAGCGAGCTGATGAGGAGTTACGGAGGAATTATGTCCCGCCACCAGGTTTCAGCATCACCCCACCGCCTCCAAACAGACAAAGCAGTGACTCAGCCTTCTCGACGCACACGGACACCTCCAACCAGCTCTCCAAACCCTCCTCCTCCAGCGACATCCCCACTCCCAACAGGACTCGCAAGCGCAGCCGCAGTCGTAGCGTCGACGCCGCCTCCGTGGGCTCCCGCTCGCAGGAACGCCCCACCAACACCAAGCGCGTCCAGGAACTCAAAAACTCGCACAAAAAACGACCAAGAGTCGAATCCCCGAACACATCCTACGCTGATTCTGACTATGAGGCTTCAGAATTTGACGCTTCACAATTCTCTATGGAGACCGACTCTGATGAGCCTTTGCTCAAAGATGGAAACTACAAATGTACAAAATGTGACAAGACCTTCACGAAAATCCGCAGCCGCGCTTCGCACATGAGAATTCACACTCGTGAGGCGCTCGCGCAGAATGATGCCGTTGTAGACATccctaaagaagaagaaaatcatGTCGACCCGTACGGAGAAGACGCGAACGACGCCGAGGATAAACTGAGCTGCGAGAAATGTGACAAAACCTTCAAGCTGAAGATCATGTTGAAGCGACACATGGCTACTTGCAATGGGAAACAGGCTCCGCAGATTTCTCCCACAAAAGAATTGCTTATATCTCTGCAGCCGATTGACCAAGTACCTGGAGTGGGGAAGCTAAATTGCGAGATTTGTACCGCTCAGTTCAAAACGCTAGATAACCTTCGCAAGCATATGCGGGTGATACACGCTGCTGTGCCCAGGGTCGACACTATCATCCTGCCCAAAGAGCCCGTGTCCGTCCCTTGCCTATTCTGCCGGCAGAACTTCGAGGATTACTTCGTCCATACAGAGCATTTCCACAAGTGTCCCGAAAAGAAGCCAGTCGCAAGTTACGAGTGTCCGATGTGCAGTAAATCTATAGGGAGAGTGCAGAACTACTTGAGTCACATGCGTTTCGTGCACTTCGAGCCGAAAGCGGGGCAAAACTCGCAGGCCTCTGGGGAGTTCCAGTGCCGCATGTGCAGCAAGAAGTTGGCGTCGCAGGACTTGCTCATCACGCACCTCGCCGCGCACATGTCCAACATTGATGGGAACGACACGGCCGACACCGATTCTAGGGCTAGTCCCGTGGTAGACGACCACGCCGCGGACACGAGCTACACGGGCTACATGCCGCACGGGCCCCACAAGTGTCCGCACTGCGTCAAATCCTTCTCATACAAGAAGTCCCTTGAGTCGCACATCATCAAATGGCACCCCAACTTGCCGCTCGAGGTCAAGGTCGAAGTCCCGCCCGATAAGAACGCCTCCACCAGTCTCCTCACAGAGAAATACCAAGAGAGCGAGTCTGAGTCTAGTCAAGAAGAAGCTGAAGACCTTACGTGTGATATTTGCGAGAAAATGTTCTCGTACAAGCGTCTCTTACTGCACCACAAGAAGACGAAACACAACATGAGTTCCGGGCACAAGCGCGCGAAAATCAACCTTAAAGACTGCATGGTGCGCTGTCTCATATGCGATATTGAGATGAAAGTGAGTGCTGTGAACGAGCACAATCAGAAGCACATAACGGCTAACATCAAGCCTCGTAATATGTACACGTGCGCGCAGTGTGGGGAGAAGTTCAAGGCGTGCAGTGGTCTGGCGAATCACATCAAGCTGATCCACCGGTTGAAGCAGGTGCCAAAGCCGAAGGTGCCGAGGCTGCAGGGCGGGTCGGAGCTGGCGGATTTTTGTGAGGTCGTTGTGACGAAGACGGAGCCCCTGGACGAAATCCAGAGTCACAACGGCTTAGAGGGTCCGTCGGAAACGGCGCCGCATGTGAACCTGAGCGGGTTCACTTGCCCCATCTGCAGCAAGACGCTGGGCACGCTCATCTCGCTCAAGAGACACGTCAACTGGCATTCCAATGTGGGCAACAACATTGAGCAGAAGACAGAGTGCTTCGTCTGTAAGGAGACGTTCCGCTTCAAACGGCACTACCGGCTGCACATGAGCCAGCACTACAAGGACCCCAACATCGACCCCAAGCACCTGACGTGCAGCATCTGCAACCGCAAGAGCAAGCATCTGCGCGCCGCGCTCGCCCACCTCAACTTCCACAAGCAGACGCGTTTCCAGAACCAGGACTACCAGTGCTCCATCTGCAAGCGCGTCTTCCAGTACCGCAAGGTCTACCTCTCGCACATGGCCATACACTACAAGCGCGGTGAGAGCATCCAGAACACTGTCGTCGGCTCTGTACTACCCGAAAACGCTGACAAAACCGCTTTTGACGGCTCCCACACGTGCCACCTCTGCGGCAAGGTTTGCGACTCCGAAAGCTCCCTCAAATGTCACGTGAACTGGCACAAATCCAAGACTTCGCTGTACGGCAACAGGCACGAGTGCCACATTTGCCAAGTGCAGTTTACCAACAAGCGGAGATTGGAAATACACATTCGAGAACATTACGAGGATGATAACGGCCCGTTCAAGTGCACTATCTGCGGCAAGGGGTACATCGAAGAGGACTACTTCAGGCGACACGTCAAGGGCCATAACTTCGACAATCAAAGTCACAAGAAGCGGATAGAGAAATTACGGAAAGACAAGGTAAAGTGCCCCATTTGTACCCGATTTTATCCGGATCTTTTACATCTCATCCGGCACATTAAGCGCACGCATCCGGAGAGTAAGATGATCAAGACGGACCCCGATGCTCCGCCGCCCATGTACTACTCGTGCAAACTTTGCGCTAAGGTGTTCCTCGACCAGCGTCGGTTACAGAACCACGAGGAAGCCCACTTGAGGAAGCCAGAGTTCTTCAAGTGCAAATTCTGTGGTAAGAAAACTATATCGCTGAAGAACCACAGGGTACACATCAAAGGGCACCTGACGACGAAGTTCTTTGACAATCCGCTGAAGTGCACGCAGTGTGACGAGATGTTCATCCGAGGCTACGACCTGCACCACCACTTGCGCGACGTGCACGGCATCGAGGAGACGTGGATCGCGGAGCGCAACGAGCAGGCGCTGACCGGCCCGCTCAAGGACCTGCAGTGCTCCGTGTGCCTCAAGGTGCTCGCCAGCAAGGGCAACTACGAGCGCCACATCGACTACCACAACTCCCTGCGCTGCAACTACTGCTTCGACTACTTCAGCTCACTCAGGTTCCTTGAAGGCCATCTCGCATTCAGTTGTGATAAGAAAAAACTCATCGGCGACACGGAAGTCCATCAGAGGAAGATTAAGTGCCACGTTTGCTACAAAGCTTTCCATTTGCAAGTGAAGTTGGACTGTCATTTACGAACGCAGCACAACATCAAAGTAAACAAGGAAGCCTCTTCCGATAAGAAAGATATAGTGTGCGATTACTGTTTTAAAGTATTCGAAAACGAGTATTGCTTGAGTAATCATAAGATTTACCATCGCACTATTGGGTATTTCGGGTGCATCTATTGCAACAGGAAGTTTAACACGATGACTTTGTACCGGAAACATAAGAATCACCATTTTGCACAACTGAATGTGGATAACCCAACCAAGTGTGAGCATTGCGACGAGACATTCGTTCCTTTCCGCGACATGATATACCACATGAAGGACGTGCACGGTGACGACAAGGAATGGGTGGTGTTGCCCAAGGAGTCTATTGAAGAAGAGTGCCCTATCTGCAAAAAGGTGTTCTTTAACTTGCACAGGCACTTGGATTACCATGAGGACAATAAGTGCAAGAAGTGTGGAGAGTACTTCTTCTCAAGAACAGACTATGACAACCACTTGTGTAGCATCGAGAGCGACGATGAGACCGCGGAGAGAGTCGACGGCAGCTTGGAGTCCCAGTACCAGGAGTGCAACTTCTGCTTCAAGCCCATAACCAGGGTGAGCTCGGAGCTGAAGCACGTCAAGATACACAGAGGATCGGGCTCAATATCCTGCCGCTTCTGCTCACTCAAGTTCAAGACGATGGATGCGTTTAACATTCACGCCTTCTCACACAGAAGTCGCAAATATCACAAGAAGCCCATAAAGTGTCGGAAGTGCAACGAGCATTTCGTGAAGTATGGGCCGTTCATGAAGCACATGAAGACAGTGCACAAGTCCACTCAGAAGCTGCACTACCGAGCCATCGTTAAGGCCGAGCCGTGCGTGGTGTGCGGCGACGAGTTCCCCAACCTTCACAACCACTACCGAGCTCATCTGCAGAACCAGTGTCAGAACTGCAAGAAGTACTTCACATCCTCCAAACTGTTCTCGCGGCACCAGTGTGACGTACCAGACGCCGATCCATCCAAGGTCTTCACGTGTGACGAAAaccttctagtacttataaacACGTACGTTCCTAAAGATGAAAAAGACGATGAGAAATACTACGGCCacgacgacgatgatgatgatgagaaagaAGTGGAAGCGGCAGAGCAGAGTGAGTTTATAAACGAGAATGATATAAAGACGACCATTGAAAGTCAGGACGAGGAGAGTCAGGAGGCTCCTGTTCCGGAGCCCGATCCGACCGAGAGGAGTCTCCACCTCATGGCGCAGTCTCCGATCATCTCCGACGTGCTCTCGCTGTATCAGAGTCAGCAAGAGGCCGATGATGACGTCGTTCACATCACCGATGACGACTCTATGGACATTGATGTTAGCATCCCGGTTATAACCATTGATTAA
Protein Sequence: MALKLGKCRLCLKLGDFYSIFTVDNALQLAEMVMECTRVKVYEGDGLPDKICTECVQKLSSAYIFKQQCERADEELRRNYVPPPGFSITPPPPNRQSSDSAFSTHTDTSNQLSKPSSSSDIPTPNRTRKRSRSRSVDAASVGSRSQERPTNTKRVQELKNSHKKRPRVESPNTSYADSDYEASEFDASQFSMETDSDEPLLKDGNYKCTKCDKTFTKIRSRASHMRIHTREALAQNDAVVDIPKEEENHVDPYGEDANDAEDKLSCEKCDKTFKLKIMLKRHMATCNGKQAPQISPTKELLISLQPIDQVPGVGKLNCEICTAQFKTLDNLRKHMRVIHAAVPRVDTIILPKEPVSVPCLFCRQNFEDYFVHTEHFHKCPEKKPVASYECPMCSKSIGRVQNYLSHMRFVHFEPKAGQNSQASGEFQCRMCSKKLASQDLLITHLAAHMSNIDGNDTADTDSRASPVVDDHAADTSYTGYMPHGPHKCPHCVKSFSYKKSLESHIIKWHPNLPLEVKVEVPPDKNASTSLLTEKYQESESESSQEEAEDLTCDICEKMFSYKRLLLHHKKTKHNMSSGHKRAKINLKDCMVRCLICDIEMKVSAVNEHNQKHITANIKPRNMYTCAQCGEKFKACSGLANHIKLIHRLKQVPKPKVPRLQGGSELADFCEVVVTKTEPLDEIQSHNGLEGPSETAPHVNLSGFTCPICSKTLGTLISLKRHVNWHSNVGNNIEQKTECFVCKETFRFKRHYRLHMSQHYKDPNIDPKHLTCSICNRKSKHLRAALAHLNFHKQTRFQNQDYQCSICKRVFQYRKVYLSHMAIHYKRGESIQNTVVGSVLPENADKTAFDGSHTCHLCGKVCDSESSLKCHVNWHKSKTSLYGNRHECHICQVQFTNKRRLEIHIREHYEDDNGPFKCTICGKGYIEEDYFRRHVKGHNFDNQSHKKRIEKLRKDKVKCPICTRFYPDLLHLIRHIKRTHPESKMIKTDPDAPPPMYYSCKLCAKVFLDQRRLQNHEEAHLRKPEFFKCKFCGKKTISLKNHRVHIKGHLTTKFFDNPLKCTQCDEMFIRGYDLHHHLRDVHGIEETWIAERNEQALTGPLKDLQCSVCLKVLASKGNYERHIDYHNSLRCNYCFDYFSSLRFLEGHLAFSCDKKKLIGDTEVHQRKIKCHVCYKAFHLQVKLDCHLRTQHNIKVNKEASSDKKDIVCDYCFKVFENEYCLSNHKIYHRTIGYFGCIYCNRKFNTMTLYRKHKNHHFAQLNVDNPTKCEHCDETFVPFRDMIYHMKDVHGDDKEWVVLPKESIEEECPICKKVFFNLHRHLDYHEDNKCKKCGEYFFSRTDYDNHLCSIESDDETAERVDGSLESQYQECNFCFKPITRVSSELKHVKIHRGSGSISCRFCSLKFKTMDAFNIHAFSHRSRKYHKKPIKCRKCNEHFVKYGPFMKHMKTVHKSTQKLHYRAIVKAEPCVVCGDEFPNLHNHYRAHLQNQCQNCKKYFTSSKLFSRHQCDVPDADPSKVFTCDENLLVLINTYVPKDEKDDEKYYGHDDDDDDEKEVEAAEQSEFINENDIKTTIESQDEESQEAPVPEPDPTERSLHLMAQSPIISDVLSLYQSQQEADDDVVHITDDDSMDIDVSIPVITID

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00012238;
90% Identity: iTF_00640700;
80% Identity: -