Rros019293.1
Basic Information
- Insect
- Rhingia rostrata
- Gene Symbol
- stc
- Assembly
- GCA_949824845.1
- Location
- OX463758.1:4360957-4364141[-]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 1.9 2.8e+04 -4.0 1.6 15 19 326 330 325 330 0.81 2 14 0.1 1.5e+03 0.0 0.3 4 10 359 365 358 367 0.93 3 14 3.9e-06 0.058 14.1 17.2 1 19 371 388 370 388 0.94 4 14 1.5 2.3e+04 -3.7 0.8 6 10 414 418 413 418 0.88 5 14 1.2e-06 0.018 15.8 12.2 3 18 426 441 424 442 0.91 6 14 0.74 1.1e+04 -2.7 2.0 9 13 448 452 446 455 0.60 7 14 1.7e-07 0.0026 18.5 19.4 1 19 482 500 482 500 0.98 8 14 0.00023 3.4 8.5 16.5 4 18 548 562 541 563 0.86 9 14 0.052 7.8e+02 0.9 12.5 1 11 603 613 603 625 0.90 10 14 4.4e-10 6.7e-06 26.7 15.5 1 18 630 647 630 648 0.97 11 14 2 3e+04 -10.4 15.2 9 18 694 704 681 705 0.70 12 14 3.1e-08 0.00046 20.9 14.5 1 16 741 756 741 766 0.88 13 14 9.2e-07 0.014 16.1 12.7 1 18 773 791 773 792 0.89 14 14 1.3 2e+04 -3.6 0.1 8 12 808 812 807 812 0.76
Sequence Information
- Coding Sequence
- ATGTCGGACACGTTTCATCGGTACCATGATGGAGCGCCGGCTGGCAGTAGCAACAACAGTAGCAGCACAGccgccaacaacaacaattatgTAAACTTCAATCAATTCGTGATGCAGCACAACATTGTTAGTGGTGCCGGAGGTGATACACCACCCGCGACTTCAACAAATCCATTCCATTACAACGGTGGTTATAGTAGCCAACAGTACGGGGCGGATGACTATTATTCGATAGATCGCAATGGTAGAAATGGCGTGTCTACGTACAACTATCAGCCGCAGTATAACTACTCCAACTCGACCCTGCATGCCACAGCGGCAGAGTTTGTTCCGAGATTCTCCAACATGTCGCTTGGTGACCGCGCTGTAAGTAAGCCAAGTGAGTTAGGAACCAATACAGCAACTGATATTCAGAACGCTAACAATAATATGAACGGAAGCAGTGGTCCGTCGACTTGCAGATCCGGTCCGCCGAATCACGTCGAATCCCTAATGAACAAGTCTCCGCCGCAACGTTACACTGGTGCGTCGAGTAAGAATCGTGATTCCACTTCGAGgggtggctctggtgttggtgCATCGTCCTCACGACGGCAGCAAAATGGCCGTGACTATCACCGAAATCAACGGTATGACAATCATCGTAGTAACAAACGTAGAGACGACTGGAACAGAAACCGTGATCGGGTCAACTCATTTAGGGACGAGAAGTACACGGTGGAGAATGGCCAAGATAGCCCACTCAACTCGCCTGAAAAAAAATCGCCCAAAAAGCCGCATCCCGATAACGAAAAACTATCGCAGAGGGAGAAACTCGTCCGTGAAATAAAAGCTCGGCGACTAGAGTGTCTCGTTTGTGTGGAACTTATTAAGAGTCACAATTCGGTTTGGTCTTGCCACAACTGCTATCACATCCTGCATCTCAACTGCATAATAAAGTGGGCTTCGAGCTCTAAATCTCAGGACGGTTGGCGTTGTCCCGCTTGCCAAAACGTAGAAAAAGAAGTGCCACGAGACTACCTTTGCTTCTGTGGTCAAGTAAAGAACCCTCAATTCAATCGAAACGACATGGCACATAGTTGTGGCGAAACTTGTGGTCGCATCGAAGGATGTTCTCACCCATGCACACTTCTCTGTCATCCAGGCCCGTGCCCACCATGCCAAGCAAACGTAACACGTGAATGCGGCTGCGGCAAGACAAGCAAAACTATGCAGTGCTATCTTAAACAGACCATCGAGTGCGAAGCCATTTGTCAGAAGCTACTGAACTGCGAGCTTCACGCCTGTGAGGATACATGTCACGAAGGCAAGTGTAAGCCGTGCGAGCAAAAGGTCGACCAGAAGTGCCACTGTGGCAAACATGACCGTCAGGTGGCATGCACAAGAGACTCACATGAAAAGAAAAACTATTCCTGTGGTAAACCATGCGGTAAGGACCTTGCTTGCGGAAATCACAAGTGTAAAGACTGCTGCCACACTGGCGAATGCCGCCCATGTAAACTCAGTCCAGAAATGGTCACCTCCTGCCCATGCAGCAAGATGCCAGTGGTTTTGGAGCAGCGAAAATCCTGTCTGGACCCGATACCCGTCTGCGATGGTATCTGCAACAAAACATTACGCTGCGGCAAGGCTGCTCATCCTCATCATTGCACAACTAAGTGTCACTTGGGCAATTGTCCACCTTGCAACAAGCAAACGGCCGTCAAGTGTCGCTGTGGTCACATGGATCAAATGATAAAATGTCGCCAGCTTTCGACTCGCGCTGATGACGCACGATGCAAGAAGCGCTGCGTTAAGAAAAGGTCTTGTGGCAAACACAAGTGCAACCAGGAATGCTGCATTGATATTGACCACATTTGCCCGATGCCATGCACATACACTCTGTCGTGTGGTAAGCACAAGTGCGACCAACCATGCCATCGGGGAAATTGTCCGCCCTGCTATCGTAGTTCTTTCGAAGAGCTATACTGCGAGTGTGGCGCCGAGGTAATCTACCCGCCAGTGCCATGTGGCACCAAGCGACCGCCATGCAACCGACCATGCTCGCGCCAACACCCATGCGAACATCCAGTTCAGCACAACTGTCACTCGGCAGCCAATTGCCCGCCGTGCATGATTTTCACTACGAAATGGTGCTTCGGGCAGCACGAGCAGCGAAAAACCATTCCATGCAGTCAGGAGACGTTCAGCTGTGGCCTGGCATGTAACAAGCCCTTGAGTTGCGGTCGCCACAAGTGTATTAAGCCGTGTCACGAGGGTCCCTGCCAGGTAGCTGGTGAGGTCTGTAAGCAGAGTTGTACAACATTGCGACAGGGATGTGGCCACAAATGTATGGCTCCATGCCACGATGGAGAATGTCCCGAAACGGCATGCAAGGAGAATGTTGAAGTGACTTGCGAGTGCGGCAATCGAAAACAGACGCGAGCTTGTCATGATTTTGCCAGAGAATATCGTCGTATCGCTACAGCACAGTTGGCCTCCTCGATGGCTGAAGTTTCACGCGGCAACACTGTCGAACTGAGCGCTATTTTGGGCACTGTCAAgattaacaacaacaaatcCATTGAATGCAATGATGAATGCCGCACGCTAGAGCGTAATCGCCGTCTGGCTATTGGCCTTCAAATTCGTAATCCCGACGTGTCACAAAAGCTACTTACCAAATACTCCGACTTTGTCCGCAGCTATGCGAAGAAAGACGCAACTTTGGTGCGAAACATTTACGAGACGCTAACCAATCTCGTCAAGTTGTCCAAGGAGAGTAAGCAAAAGTCGCGCAGTCACTCCTTTCCCATTATGAATCGCGAAAAACGTCAGCTGGTGCATGAGCTCTGCGAAATGTTTGGCATCGAATCGGTGGCTTATGATGCGGAGCCCAATAGAAATGTGGTTGCTACAGCTCACAAGGAAAAGTCCTGGTTACCAGCACAGAGCATAATGGATGTCATACAACGTGAGAGTGGACAGCGACGTGTTCCTGTTCCAAGTAATAATGCATGGGGCATAAAGCGGTAG
- Protein Sequence
- MSDTFHRYHDGAPAGSSNNSSSTAANNNNYVNFNQFVMQHNIVSGAGGDTPPATSTNPFHYNGGYSSQQYGADDYYSIDRNGRNGVSTYNYQPQYNYSNSTLHATAAEFVPRFSNMSLGDRAVSKPSELGTNTATDIQNANNNMNGSSGPSTCRSGPPNHVESLMNKSPPQRYTGASSKNRDSTSRGGSGVGASSSRRQQNGRDYHRNQRYDNHRSNKRRDDWNRNRDRVNSFRDEKYTVENGQDSPLNSPEKKSPKKPHPDNEKLSQREKLVREIKARRLECLVCVELIKSHNSVWSCHNCYHILHLNCIIKWASSSKSQDGWRCPACQNVEKEVPRDYLCFCGQVKNPQFNRNDMAHSCGETCGRIEGCSHPCTLLCHPGPCPPCQANVTRECGCGKTSKTMQCYLKQTIECEAICQKLLNCELHACEDTCHEGKCKPCEQKVDQKCHCGKHDRQVACTRDSHEKKNYSCGKPCGKDLACGNHKCKDCCHTGECRPCKLSPEMVTSCPCSKMPVVLEQRKSCLDPIPVCDGICNKTLRCGKAAHPHHCTTKCHLGNCPPCNKQTAVKCRCGHMDQMIKCRQLSTRADDARCKKRCVKKRSCGKHKCNQECCIDIDHICPMPCTYTLSCGKHKCDQPCHRGNCPPCYRSSFEELYCECGAEVIYPPVPCGTKRPPCNRPCSRQHPCEHPVQHNCHSAANCPPCMIFTTKWCFGQHEQRKTIPCSQETFSCGLACNKPLSCGRHKCIKPCHEGPCQVAGEVCKQSCTTLRQGCGHKCMAPCHDGECPETACKENVEVTCECGNRKQTRACHDFAREYRRIATAQLASSMAEVSRGNTVELSAILGTVKINNNKSIECNDECRTLERNRRLAIGLQIRNPDVSQKLLTKYSDFVRSYAKKDATLVRNIYETLTNLVKLSKESKQKSRSHSFPIMNREKRQLVHELCEMFGIESVAYDAEPNRNVVATAHKEKSWLPAQSIMDVIQRESGQRRVPVPSNNAWGIKR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01542617;
- 90% Identity
- iTF_01300484;
- 80% Identity
- -