Rcam009625.1
Basic Information
- Insect
- Rhingia campestris
- Gene Symbol
- stc
- Assembly
- GCA_932526435.1
- Location
- CAKOBE010000067.1:2388301-2391473[+]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 1.9 3.1e+04 -4.0 1.6 15 19 323 327 322 327 0.81 2 14 0.1 1.7e+03 0.0 0.3 4 10 356 362 355 364 0.93 3 14 3.8e-06 0.064 14.2 17.2 1 19 368 385 367 385 0.94 4 14 1.5 2.5e+04 -3.7 0.8 6 10 411 415 410 415 0.88 5 14 1.2e-06 0.02 15.8 12.2 3 18 423 438 421 439 0.91 6 14 0.76 1.3e+04 -2.8 1.4 8 13 444 449 443 450 0.79 7 14 1.7e-07 0.0028 18.5 19.4 1 19 479 497 479 497 0.98 8 14 0.00022 3.7 8.5 16.5 4 18 545 559 538 560 0.86 9 14 0.052 8.6e+02 1.0 12.5 1 11 600 610 600 622 0.90 10 14 4.4e-10 7.4e-06 26.7 15.5 1 18 627 644 627 645 0.97 11 14 2 3.3e+04 -10.8 15.6 9 18 691 701 678 702 0.70 12 14 3.1e-08 0.00051 20.9 14.5 1 16 738 753 738 763 0.88 13 14 4e-07 0.0067 17.3 12.2 1 18 770 788 770 789 0.89 14 14 1.3 2.2e+04 -3.6 0.1 8 12 805 809 804 809 0.76
Sequence Information
- Coding Sequence
- ATGTCCGATACGTTTCATCGGTACCATGATGGAGCGCCGGCTGGCAGTAGCAACAGTAGTGGTAGCACAGCCGCCAACAACAACAATTATGTAGATTTCAATCAATTCGTGATGCAGCACAACATTGTTAGTGGTGCAGGAGGTGATACACCGCCCGCGACTTCAACAAATCCATTCCATTACAACGGGGGTTATAGTAGCCAACAGTACGCGGCGGATGATTATTATTTGATTGATCGCAATGGAGGAAATGGCGTGTCTACGTATAACTACCAGCCGCAATATAACTACTCCAACTCGACTCTGCATGCTACGGCGGCTGAGTTTGTTCCGAGATTCTCCAACATGTCGATTGGTGACCGCGCTGTAAGTAAGCCAAATGAGTTAGGAACCAACACCGCAACTGATATTCAGAACGCCAATTTGAACGGAACCAGTGGTCCGTCGACTAGCAGATCCGGTCCGAATCACATAGATTCCTTAATGAACAAGTCGCCGCCGCGACGTTACACTGGTGCGTCGAGTAAGAATCGTGATTCGACGTCGAGGGGTGGCTCTGGCGTTGGTGCATCGTCCTCACGACGGCAGCAAAATGGCCGTGACTATCACCGAAATCAACGGTATGACAATCATCGTAGCAACAAACGCAGAGACGACTGGAACAGGAACCGCGATCGGGTCAACTCATTTAGGGATGAGAAGTACACGGTGGAGAATGGCCAAGATAGCCCACTCAACTCACCTGAAAAGAAATCGCCCAAAAAGCCGCATCCCGATAACGAAAAGCTATCGCAGAGGGAGAAACTCGTTCGAGAAATCAAAGCTCGACGACTAGAGTGCCTCGTTTGTGTGGAACTAATCAAGAGTCACAATTCGGTGTGGTCTTGCCACAACTGCTATCACATTCTGCATCTCAACTGCATTATAAAGTGGGCTTCGAGCTCTAAATCTCAGGACGGTTGGCGCTGTCCCGCTTGCCAAAACGTAGAAAAGGAAGTGCCACGAGACTACTTTTGCTTCTGTGGTCAGGTAAAGAACCCTCAATTCAATCGTAACGACATGGCACACAGTTGTGGCGAAACTTGTGGTCGCATCGAAGGATGTTCCCACCCATGCACACTTCTCTGTCATCCAGGCCCGTGCCCACCATGCCAAGCAAACGTAACACGTGAATGCGGCTGTGGCAAGACAAGCAAAACTATGCAGTGCTACCTTAAGCAGACCATCGAGTGCGAGGCCATTTGTCAGAAGCTACTTAACTGCGAACTTCACGCCTGTGAGGATACTTGCCACGAAGGCAAGTGTAAGCCGTGCGAGCAAAAGGTCGACCAGAAGTGCCACTGTGGCAAACAAGACCGTCAGGTGGCATGCACCAGAGACTCGCATGAAAAGAAAAACTATTCCTGTGGTAAACCATGCGGTAAGGACCTTGCTTGCGGAAATCACAAGTGTAAAGACTGCTGCCACACTGGCGAATGCCGCCCATGTAAACTCAGTCCAGAAATGGTCACCTCCTGCCCATGCAGCAAGATGCCAGTGGTTTTGGAGCAGCGAAAATCCTGCCTAGACCCGATTCCCGTCTGCGATGGTATCTGCAACAAAACTCTACGCTGCGGCAAGGCTGCTCATCCTCATCATTGCACAACCAAGTGTCACTTGGGCAATTGTCCACCTTGCAACAAGCAAACGGCCGTCAAGTGTCGCTGCGGTCACATGGACCAAATGATAAAATGTCGCCAACTGTCGACTCGCGCTGATGACGCACGATGCAAGAAGCGCTGCGTTAAGAAACGATCTTGTGGCAAACACAAGTGCAACCAGGAGTGCTGCATTGATATTGACCACATCTGCCCGATGCCATGCACCTATACTCTGTCGTGTGGTAAGCACAAGTGCGACCAACCATGCCATCGGGGAAATTGTCCGCCCTGCTATCGTAGTTCTTTCGAAGAGCTATACTGCGAGTGTGGCGCCGAAGTAATATATCCGCCAGTGGCATGTGGCACCAAGCGACCGCCATGCAAACGACCATGCTCACGCCAACACCCATGCGAGCATCCAGTCCAGCACAACTGCCACTCGGCAGCCAATTGCCCGCCGTGCATGATTTTCACCACGAAATGGTGCTTCGGGCAGCACGAGCAGCGAAAAACCATTCCATGCAGTCAGGAGACGTTCAGCTGTGGGCTGGCATGTAACAAGCCGTTGAGTTGCGGTCGCCACAAGTGTATTAAGCCCTGTCATGAGGGTCCCTGCCAGGTAGCTGGTGAGGTCTGCAAGCAGAGTTGTACAACATTGCGACAGGGATGTGGCCACAAATGTATGGCTCCATGCCACGATGGAGACTGCCCCGAAACGGCATGCAAGGAGAATGTTGAAGTGACTTGCGAGTGCGGCAATCGAAAGCAGACGCGAGCTTGTCATGATTTTGCCAGAGAATATCGCCGTATCGCCACGGCACAGTTGGCCTCTTCAATGGCTGAAGTTTCACGCGGAAACACTGTCGAACTGAGCGCTATTTTGGGCACCGTCAAGATCAACAACAACAAATCCATTGAATGCAATGATGAATGCCGCACACTAGAGCGCAATCGCCGGCTGGCTATTGGCCTGCAAATTCGTAATCCCGATGTGTCACAGAAGCTACTTACCAAATACTCGGACTTTGTCCGCAGCTATGCGAAGAAGGACGCAACTTTGGTGCGCAACATTTACGAGACGCTGACCAATCTCGTCAAGCTGTCCAAGGAAAGTAAGCAAAAGTCACGTAGTCACTCCTTTCCCATCATGAATCGCGAGAAACGTCAGCTGGTGCATGAGCTCTGCGAAATGTTTGGCATCGAATCGGTAGCTTACGATGCGGAGCCGAATAGAAATGTGGTCGCTACAGCTCACAAGGAAAAGTCCTGGTTACCAGCACAGAGCATAATGGATGTCATACAACGGGAGAGTGGACAGCGACGTGTTCCTGTGCCAAGTAACAATGCATGGGGCATTAAGCGGTAG
- Protein Sequence
- MSDTFHRYHDGAPAGSSNSSGSTAANNNNYVDFNQFVMQHNIVSGAGGDTPPATSTNPFHYNGGYSSQQYAADDYYLIDRNGGNGVSTYNYQPQYNYSNSTLHATAAEFVPRFSNMSIGDRAVSKPNELGTNTATDIQNANLNGTSGPSTSRSGPNHIDSLMNKSPPRRYTGASSKNRDSTSRGGSGVGASSSRRQQNGRDYHRNQRYDNHRSNKRRDDWNRNRDRVNSFRDEKYTVENGQDSPLNSPEKKSPKKPHPDNEKLSQREKLVREIKARRLECLVCVELIKSHNSVWSCHNCYHILHLNCIIKWASSSKSQDGWRCPACQNVEKEVPRDYFCFCGQVKNPQFNRNDMAHSCGETCGRIEGCSHPCTLLCHPGPCPPCQANVTRECGCGKTSKTMQCYLKQTIECEAICQKLLNCELHACEDTCHEGKCKPCEQKVDQKCHCGKQDRQVACTRDSHEKKNYSCGKPCGKDLACGNHKCKDCCHTGECRPCKLSPEMVTSCPCSKMPVVLEQRKSCLDPIPVCDGICNKTLRCGKAAHPHHCTTKCHLGNCPPCNKQTAVKCRCGHMDQMIKCRQLSTRADDARCKKRCVKKRSCGKHKCNQECCIDIDHICPMPCTYTLSCGKHKCDQPCHRGNCPPCYRSSFEELYCECGAEVIYPPVACGTKRPPCKRPCSRQHPCEHPVQHNCHSAANCPPCMIFTTKWCFGQHEQRKTIPCSQETFSCGLACNKPLSCGRHKCIKPCHEGPCQVAGEVCKQSCTTLRQGCGHKCMAPCHDGDCPETACKENVEVTCECGNRKQTRACHDFAREYRRIATAQLASSMAEVSRGNTVELSAILGTVKINNNKSIECNDECRTLERNRRLAIGLQIRNPDVSQKLLTKYSDFVRSYAKKDATLVRNIYETLTNLVKLSKESKQKSRSHSFPIMNREKRQLVHELCEMFGIESVAYDAEPNRNVVATAHKEKSWLPAQSIMDVIQRESGQRRVPVPSNNAWGIKR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01542617;
- 90% Identity
- iTF_01301329;
- 80% Identity
- -