Rros017002.1
Basic Information
- Insect
- Rhingia rostrata
- Gene Symbol
- nfxl1
- Assembly
- GCA_949824845.1
- Location
- OX463757.1:52792968-52797659[+]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 2 3e+04 -8.1 6.4 15 19 166 170 165 170 0.82 2 20 0.15 2.3e+03 -0.5 0.8 4 10 201 207 200 207 0.95 3 20 3.1e-08 0.00046 20.9 17.0 1 19 215 232 215 232 0.99 4 20 0.87 1.3e+04 -3.0 2.5 5 10 257 262 257 262 0.95 5 20 2.4e-08 0.00037 21.2 13.5 1 19 268 287 268 287 0.98 6 20 1.4 2.1e+04 -3.6 1.8 6 10 312 316 311 316 0.89 7 20 1.2e-06 0.018 15.7 11.7 1 19 322 340 322 340 0.97 8 20 0.013 1.9e+02 2.9 1.9 5 12 364 371 364 371 0.93 9 20 5.3e-08 0.0008 20.1 12.5 1 19 375 393 375 393 0.98 10 20 0.42 6.4e+03 -2.0 0.4 1 5 402 406 402 411 0.84 11 20 2.3e-05 0.34 11.7 15.3 1 18 427 444 427 445 0.98 12 20 7.1e-08 0.0011 19.7 14.5 3 19 456 472 448 472 0.85 13 20 0.0026 39 5.1 12.7 8 18 516 526 507 527 0.87 14 20 0.088 1.3e+03 0.2 4.9 3 11 540 548 530 549 0.85 15 20 0.33 4.9e+03 -1.6 0.9 6 10 608 612 607 612 0.90 16 20 2.2e-06 0.033 14.9 5.6 1 12 618 629 618 629 0.97 17 20 2 3e+04 -5.3 4.9 15 19 642 646 642 650 0.53 18 20 8.2e-05 1.2 9.9 14.3 4 19 659 674 657 674 0.93 19 20 2 3e+04 -5.1 2.0 9 13 680 684 679 684 0.74 20 20 1.2e-06 0.017 15.8 11.0 1 16 725 739 725 745 0.86
Sequence Information
- Coding Sequence
- atgtctGCCCCAAATTTACCTAAGGGAAATAAACAATACCATGCTTCAAGTTCAAAAACAGCGGAAAAATCTGTTAAAAAACATGAAACTaacaaatttcaagaaattcaaACTAAAAACATAGAGATGGCGAAAAAAATTACCGAAAACTACGAATCTAGTTCTGATGAAGAGCAACTCGATGGAGGCAAAATCTTGGaaaaattatacaaaaactattcTGGTGGAAATGATCAGCTTCAAAAAACTGCTGGTTTCTTGGAAAATGTCTTGCAATCGGGGTCTGCTGTTTGCCTTATATGCATTGGTTCGGTGAAGCGGGCTGATCCAATTTGGTCATGTAAACATTGTTATTGTGTTCTTCATTTGTCGTGCGTCAAACGATGGGCAAATGATAGTATAGCCCTGCTGAAGGAAAGAGGAACCGAAGAACAGGGCTACTACAATAATCTCGGTGCCTTTATTCCAAAGAAGGTAAAGGCTGTGAAGTGGTGTTGTCCACAGTGTCGCCGTGATTACCAACCAGATGAGAGGCCAACACAATACGAATGCTTTTGTGGCAAAGAAGTAAACCCATCGAATCAAGAGTGGCTGGTTCCACATTCATGCGGCGAAACTTGTGAAAAACTTTTACAACCCGAATGTGGACACAAGTGTTTGCTCCTCTGTCATCCAGGTCCATGCCCACCATGTCCACAGAATATTGTGATTAGCTGTAAATGTCAAAAGTCTCCACCGAAGGCCTTACGGTGCTTTCAGAAAAGCTGGACTTGTGAAAAGAAATGCTCCGAGTTTCTGCCATGTGGAAAGCACAAATGTGATCAAGTTTGTCATGCTCCAGGGCAGTGTCCTGCATGTAGTAAAACAAGTCGGCAGAAATGTGTCTGCGGCCACGAGGAAGCAGTTAAAAGCTGTTCCCAGCGAGACTGGCAATGCAAAAAGgtttgcAACAAAAAGTATTCCTGTACAATTCATAGTTGCAAAAAGGTCTGCCATATGGGCACATGTGGAGAATGTCCTCTTGGGCTTCCTAGATCATGTCCTTGTGGCAAAACTAAAAAGACTGTCCTCTGCAATGAATCAATTGATACTTGTAACGATACTTGCCACAAGGTACTTTCATGTGGACAACATTACTGCACACAGCGATGTCACAAGGGGGATTGTAGCTTGTGCCCAattattacaaagaaaaaatgtcgCTGTGGGATGCACGAGAAGGAAATACCATGCTATAAGACGTTTTTCTGCGAAACGAAATGCAAAAAGATTCGAGACTGTGGAAAACACGCTTGCAATAAAAAGTGTTGTGATGATCAGTGTCCACCATGCGATAAGGTGTGCGGAAAACCACTGTCTTGCAAAAAGCACAAGTGCAACTCCGTCTGCCACGATGGGCCGTGTTACCCGTGCAAATTGAAAACACAAGTCAAATGCCGGTGCGGGACTACAACAATTGCAGTACCTTGCGGCAGAGAGCGTAGATCACGTGTAGTTTGCATGGAACTTTGCagAATCCAGAGCAAATGTCATCATCAAAATAAGCACAAATGCCACAAGGGAGATTGCCCGTCGTGTAATCAAAAATGTGGATTGAGAAACGATACCACTAATTGTGAGCATATCTGTGAAGCACGTTGTCATGCGGCTGTACGAGTTCCACTTAAGCAACCGACCAATGCTAATATATTTGAATACAAATTTGACAGCTATGAAATCAAAAGTCTACCACATCCAAAATGCGAAAAGAAGGTAATTGTGGAATGTATTGGAGGACATGAGATTGCCGAATGGCCGTGTTGGAATTCAAAGCCAACTTCATGTCAACGATTGTGTGGTCGTAGTTTGAAATGTGGCAATCATACGTGCTCGCTTGTTTGTCATAGTGTACCTAATCGGGAAGAGAAATATCAACAGGATGGATGCGCACCATGTCCGGAAGGATGTCACATCGTTCGTCCTCCCGGTTGTGTACATCGTTGTAAGAAACCATGTCATCAAGCACCTTGCGATCCGTGTTCAGCGACAACAAAGACAACGTGTCACTGTGGCCTTTCTCAAGTTTACTACAAATGCTCTGAATACTATTCCATCGACGGAAGCACAAGCGAAATATTTGAACGCCAAGAGAAGCTAAAAAGTTGCGGCAATCGTTGCCTTAAAAATTACCCATGTGGTCATCGTTGTTCTTCTATTTGTCATTCGGGAACAtgccaaaatcccgaaaactgCCGCAAAAAGGTAAAAATCTACTGCGAATGCAAGCGCATCAAAATGGAGGTGCCTTGTGAGAGGTCTCGTTCTGGTACTGGGTTCATACAATGCGACAACAATTGCGTGATCACTAAAGCAGCCCTGGAGAAAACCAAGCACGAAGAAGCCGAAAAACAACGCCTCGCCGAGGAAGAACAAAACCGCATTGAATTGGAACAGTTCGAGAAGAGATTCGGCAAACGGAAACCTCGCGAACGTCGGCCCGTTGTACAAGAAATACAGAAAAACAACAACCAGACAATGATATTAATTGCAGCCGCAGTCGTAGTAACCGCAGCTGTAGGTTTATCTTTTTATTATTACCATTAA
- Protein Sequence
- MSAPNLPKGNKQYHASSSKTAEKSVKKHETNKFQEIQTKNIEMAKKITENYESSSDEEQLDGGKILEKLYKNYSGGNDQLQKTAGFLENVLQSGSAVCLICIGSVKRADPIWSCKHCYCVLHLSCVKRWANDSIALLKERGTEEQGYYNNLGAFIPKKVKAVKWCCPQCRRDYQPDERPTQYECFCGKEVNPSNQEWLVPHSCGETCEKLLQPECGHKCLLLCHPGPCPPCPQNIVISCKCQKSPPKALRCFQKSWTCEKKCSEFLPCGKHKCDQVCHAPGQCPACSKTSRQKCVCGHEEAVKSCSQRDWQCKKVCNKKYSCTIHSCKKVCHMGTCGECPLGLPRSCPCGKTKKTVLCNESIDTCNDTCHKVLSCGQHYCTQRCHKGDCSLCPIITKKKCRCGMHEKEIPCYKTFFCETKCKKIRDCGKHACNKKCCDDQCPPCDKVCGKPLSCKKHKCNSVCHDGPCYPCKLKTQVKCRCGTTTIAVPCGRERRSRVVCMELCRIQSKCHHQNKHKCHKGDCPSCNQKCGLRNDTTNCEHICEARCHAAVRVPLKQPTNANIFEYKFDSYEIKSLPHPKCEKKVIVECIGGHEIAEWPCWNSKPTSCQRLCGRSLKCGNHTCSLVCHSVPNREEKYQQDGCAPCPEGCHIVRPPGCVHRCKKPCHQAPCDPCSATTKTTCHCGLSQVYYKCSEYYSIDGSTSEIFERQEKLKSCGNRCLKNYPCGHRCSSICHSGTCQNPENCRKKVKIYCECKRIKMEVPCERSRSGTGFIQCDNNCVITKAALEKTKHEEAEKQRLAEEEQNRIELEQFEKRFGKRKPRERRPVVQEIQKNNNQTMILIAAAVVVTAAVGLSFYYYH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01223893;
- 90% Identity
- iTF_01300483;
- 80% Identity
- -