Rcam025244.1
Basic Information
- Insect
- Rhingia campestris
- Gene Symbol
- nfxl1
- Assembly
- GCA_932526435.1
- Location
- CAKOBE010000255.1:302521-308656[-]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 2 3.3e+04 -8.1 6.4 15 19 165 169 164 169 0.82 2 20 0.15 2.5e+03 -0.5 0.8 4 10 200 206 199 206 0.95 3 20 3e-08 0.00051 20.9 17.0 1 19 214 231 214 231 0.99 4 20 0.87 1.4e+04 -3.0 2.5 5 10 256 261 256 261 0.95 5 20 2.4e-08 0.0004 21.2 13.5 1 19 267 286 267 286 0.98 6 20 1.4 2.3e+04 -3.6 1.8 6 10 311 315 310 315 0.89 7 20 4.1e-07 0.0068 17.3 12.8 1 19 321 339 321 339 0.97 8 20 0.013 2.1e+02 2.9 1.9 5 12 363 370 363 370 0.93 9 20 5.3e-08 0.00088 20.1 12.5 1 19 374 392 374 392 0.98 10 20 0.42 7e+03 -2.0 0.4 1 5 401 405 401 410 0.84 11 20 2.3e-05 0.38 11.7 15.3 1 18 426 443 426 444 0.98 12 20 7.1e-08 0.0012 19.7 14.5 3 19 455 471 447 471 0.85 13 20 0.64 1.1e+04 -2.5 0.7 7 12 506 511 506 513 0.77 14 20 2.9e-05 0.47 11.4 5.7 9 18 516 525 514 526 0.91 15 20 0.088 1.5e+03 0.2 4.9 3 11 539 547 529 548 0.85 16 20 0.33 5.5e+03 -1.6 0.9 6 10 607 611 606 611 0.90 17 20 8.2e-06 0.14 13.1 6.1 1 11 617 627 617 628 0.96 18 20 1.4 2.3e+04 -3.6 2.5 15 19 641 645 640 645 0.91 19 20 9.9e-05 1.6 9.6 15.1 3 19 657 673 656 673 0.92 20 20 1e-06 0.017 16.0 11.5 1 17 724 742 724 744 0.86
Sequence Information
- Coding Sequence
- ATGTCTGCCCAAAATGTACCTAAGGGAAATAAACAAAAACATGCTTCAAGTTCAACAGCGAAAAAATCTGTTAAAAAACCTGAAACTAACAAATTTAAAGAAATTCAAACTAAAAACATTGAGATTGCGAAAAAAATTACCGAAAACTACGAATCTAGTTCTGATGAAGAGCAACTCGATGGAGGCAAAATCCTAGAAAAATTATACAAAAACTACTCTGGTGGAAATGATCAGCTTCAGAAAACTGCTGGATTCTTGGAAAATGTTTTGCAATCGGGATCTGCTGTCTGCCTTATATGTATTGGTTCGGTGAAGCGGGCTGATCCAATTTGGTCATGTAAATACTGTTATTGTGTTCTTCATTTGTCGTGCGTCAAACGATGGGCAAATGATAGTATAGCCCTGCTGAAGGAAAAAGGAACCGAAGAACAGGGCTACTACAATAATCTCGGTGATTTTATTCCAAAGAAGGTAAAGACTGTGAAGTGGTGTTGTCCACAATGTCGCCGTGATTACCAACCAGATGAGAGACCAACTCAATACGAATGCTTTTGTGGCAAAGAAGTAAACCCGTCGAATCAAGAGTGGCTGGTTCCACATTCATGCGGCGAGACTTGTGAAAAACCTTTACAACCCGAATGTGGACATAAGTGTTTGCTTCTCTGTCATCCAGGACCATGCCCACCATGTCCACAGAATATTGTCGTTAGCTGTAAATGTCGAAAGTCTCCACCAAAGGCCTTACGGTGCTTTCAGAAAAGTTGGACTTGTGAAAAGAAATGCTCCGAGTTTCTGCCATGTGGGAAGCACAAATGTGATCAAGTTTGTCATGCTCCAGGGCAGTGTCCTGCTTGTAGTAAAACAAGTCGGCAGAAATGTGTCTGCGGGCATGAAGAGGCAGTTAAAAGCTGTTCCCAACGAGACTGGCAATGCAAAAAGGTTTGCAACAAAAAGTACTCGTGTACAATTCATAGCTGCAAAAAGGTCTGTCATATCGGCCCATGTGGAGAATGTCCTCTTGGGCTTCCTAGAACATGCCCATGTGGCAAAACTAAAAAGATTGCCCCTTGCACTGAATCGATTGATACTTGTAACGATACTTGTCACAAGGTACTATCATGTGGACAACATTACTGCACACAGCGATGTCACAAGGGGGATTGTAGCTTGTGCCCAATTATTACAAAGAAAAAGTGTCGCTGTGGGATGCACGAGAAGGAAATACCATGCTATAAGACGTTTTTCTGCGAAACGAAATGCAAAAAGATTCGAGACTGTGGGAAACACGCTTGTAACAAAAAGTGTTGTGATGATCAGTGTCCTCCATGCGACAAGGTGTGCGGAAAACCACTGTCATGCAAAAAGCACAAGTGCAACTCCGTCTGCCATGATGGACCGTGTTACCCGTGCAAATTGAAATCACAAGTCAAATGTCGGTGCGGAACTACAACCATTTCAGTACCTTGCGGCAGAGAGCGTAGATCACGTGTAGTTTGCATGGAACTTTGCAGAATCCAGAGCAAATGTCATCATCAAAATAGGCACAAATGCCATAAGGGAGATTGTCCATCGTGTAATCAAAAATGCGGATTAAGAAACGATACCACCAATTGCGAACATATCTGTGAAGCACGTTGTCATGCGGCTGTACGAGTTCCACTCAAGCAACCCACCAACGCTAACATATTTGAGTACAAATTTGACAGCTATGAAATCAAAAGTCTACCACATCCAAAATGTGAAAAGAAGGTAATTGTGGAATGTATTGGAGGACATGAGATTGCCGAATGGCCGTGTTGGAATTCGAAGCCAACTTCATGTCAACGATTGTGTGGTCGCAGTTTGAAATGTGGCAATCATAAGTGCTCGCTTGTTTGTCATAATGTACCTAATCGGGAAGAGAAATGTCAACAGAATGGGTGCGCACCGTGTCCTGAAGGATGTCAGATCGTTCGTCCCCCCGGTTGTACACATCGCTGTAAGAAACCATGTCATCAAGCACCTTGCGATCCGTGTTCAGCGACAACAAAGACAATGTGTCACTGCGGCCTCTCACAAGTTTACTACAAATGCTCTGAATACTATTCCATCGAGGGGAGCACAAGCGAGATCTTTGACCGCCAAGAGAAGCTAAAAAGTTGCGGCAATCGTTGTCTTAAAAATTACCCATGTGGTCATCGTTGTTCTTCTATTTGCCATTCGGGAACGTGCCCAAATCCCGAAAACTGTCGCAAAAAGGTGAAAATCTACTGCGAATGCAAGCGCATCAAAATGGACGTGACTTGTGAAAGGTATCGTTCTGGTGCTGGATTCATACAATGCGACGACAATTGCGTGATTACTAAAGCAGCCCTGGAGAAAACCAAGCAAGAAGAAGCGGAAAAACAACGACTCGTCGAGGAAGAACGAAACCGCATTGAATTGGAACAGTTCGAGAAGAGATTCGGGAAACGGAAACCTCGCGAGCGTCGGCCCGTTGTACAAGAAATTCAGACAAATAACAACCAGACAAAGATATTAATTGCAGCCGCAGTCGTAGTAACCGCAGCTGTGGGCTTATCTTTTTATTATTACCATTGA
- Protein Sequence
- MSAQNVPKGNKQKHASSSTAKKSVKKPETNKFKEIQTKNIEIAKKITENYESSSDEEQLDGGKILEKLYKNYSGGNDQLQKTAGFLENVLQSGSAVCLICIGSVKRADPIWSCKYCYCVLHLSCVKRWANDSIALLKEKGTEEQGYYNNLGDFIPKKVKTVKWCCPQCRRDYQPDERPTQYECFCGKEVNPSNQEWLVPHSCGETCEKPLQPECGHKCLLLCHPGPCPPCPQNIVVSCKCRKSPPKALRCFQKSWTCEKKCSEFLPCGKHKCDQVCHAPGQCPACSKTSRQKCVCGHEEAVKSCSQRDWQCKKVCNKKYSCTIHSCKKVCHIGPCGECPLGLPRTCPCGKTKKIAPCTESIDTCNDTCHKVLSCGQHYCTQRCHKGDCSLCPIITKKKCRCGMHEKEIPCYKTFFCETKCKKIRDCGKHACNKKCCDDQCPPCDKVCGKPLSCKKHKCNSVCHDGPCYPCKLKSQVKCRCGTTTISVPCGRERRSRVVCMELCRIQSKCHHQNRHKCHKGDCPSCNQKCGLRNDTTNCEHICEARCHAAVRVPLKQPTNANIFEYKFDSYEIKSLPHPKCEKKVIVECIGGHEIAEWPCWNSKPTSCQRLCGRSLKCGNHKCSLVCHNVPNREEKCQQNGCAPCPEGCQIVRPPGCTHRCKKPCHQAPCDPCSATTKTMCHCGLSQVYYKCSEYYSIEGSTSEIFDRQEKLKSCGNRCLKNYPCGHRCSSICHSGTCPNPENCRKKVKIYCECKRIKMDVTCERYRSGAGFIQCDDNCVITKAALEKTKQEEAEKQRLVEEERNRIELEQFEKRFGKRKPRERRPVVQEIQTNNNQTKILIAAAVVVTAAVGLSFYYYH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01223893;
- 90% Identity
- iTF_01301328;
- 80% Identity
- -