Rros017999.1
Basic Information
- Insect
- Rhingia rostrata
- Gene Symbol
- -
- Assembly
- GCA_949824845.1
- Location
- OX463757.1:76030805-76039584[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 0.0027 20 6.1 0.2 25 46 51 72 39 80 0.82 2 7 0.00052 3.9 8.4 0.3 26 49 84 107 73 110 0.82 3 7 0.00014 1 10.2 0.3 21 48 107 134 105 138 0.91 4 7 0.071 5.3e+02 1.6 0.0 21 44 164 187 160 192 0.85 5 7 0.0039 29 5.6 0.0 26 49 197 219 191 224 0.85 6 7 0.0078 59 4.6 0.5 25 48 224 247 217 254 0.85 7 7 0.045 3.4e+02 2.2 0.2 21 45 302 326 296 339 0.82
Sequence Information
- Coding Sequence
- ATGAATACACGCGGAGCTTTGAAGAGGCAGCTCTCGAAAGATGATACATGTAGCTCACTGCGGGACAGTGGTATATCTATATCTGAAGGAGTCTCTGAAAACGAATTGGAAGTCAAACACAATCCTcctaagaagaagaaaaagaaaaacaatctaTGTCGCATCTGTAAGAAGACCTTTAGAGATAAAAAGGATTTGGAGCGTCACATTCACATCCATAAGCCCGATGTGATCAAACCTCGAGATAAGCAATGTCACATCTGCGTGAAGAAATTTAGGAATGGCACTGATTTACGACGCCACCTTCTCATTCATACAAATGAAAAGCCGCACGAATGCGAAATATGCAAGAAGGCCTATAggcaagaaataaatttaaacaatcACATCATTATGGTGCACACAAAGAGACGAGATTTTAAGTGTCAGTTTTGCAAGAAGGCGTTCGGAGTGAAGGCAAGTCTGAAACTTCATTTGCGGATGCATACAGGAGAGAATCCTTATTCCTGCCCGCACTGTGAAATGAAGTTCGGTCAAGGAGGGCAATTTGAAAAGCATCTAGCGACCCATGGAAAAGTCGAGAAGAAATCTTGTGAACTCTGTTTCTCTACGTTTACCAGTGAACGAAATTTAATAATGCACATGGAACGTCATGAGCAGGGCCCGAGTGTAACATGCCATATCTGCGAACGTATGTTCAAGAATGACTTGGCTTTAAAGGCTCATCTACGTATAAACCATGGAAAGGTGAAACCCGAATGCCAGATTTGTGAATTGGTCGTCGAAGGAGACATGCACACGCATATGAAGTCTCATTTTGCGGAAAAGTCCGTTGAATGCAGTGAATGCCATACGATATTTGGCTCGAAGAATCAGTTAATCGTTCATATGAGGACGCACTCGGGAGAGAAGCCGTTTAAGTGCAGGgtCTGCTCCCAAAGCTTTGGACATAAGAATGTTCTCAAGCGGCACATCAGAAAGCATACCGGGGAAAAACCATTCAAATGTGTTTTATGTGAAAATGCCGATAACACTTACGTAGCATTCTCTCAATTGTGTCATCTGAAAACACATATGAAAACGATTCATAAAAAAGATAAGACCTACGTTTGCGAAGGCTGCAAAGAGccatttaaagtgaaatttcaaCTCGAGAGACATCAAGagttttgtgaaaaaataacACCACCAACTAATTTTGATGAATAtgaagtagaaaaaaaagagaaggaATCATACTTACTATCACACCTCAGATATCTTGTAGCAGTGCTTTTGAAAAAGATATCCACCGAAGAGAAGCTTACAGCACTTGGGTTCGACAAAAGACTTATAGACAATGTACTAATAGCATCGCTAAAAGTTGCTaatcgcaagttctaccaaagtagaaaaataaaCGAGTTAGaacgaatgaaattaaatattcagGAATTTTTAGAATGGCTTCTCCCTGAAAATGTGTTGGATGGTTTTAAAAAGGAGTGCCCATCCATAGAAAATATTCTAGAGATGATAGTCTCAAAGTATTTGAAAGACAATTAA
- Protein Sequence
- MNTRGALKRQLSKDDTCSSLRDSGISISEGVSENELEVKHNPPKKKKKKNNLCRICKKTFRDKKDLERHIHIHKPDVIKPRDKQCHICVKKFRNGTDLRRHLLIHTNEKPHECEICKKAYRQEINLNNHIIMVHTKRRDFKCQFCKKAFGVKASLKLHLRMHTGENPYSCPHCEMKFGQGGQFEKHLATHGKVEKKSCELCFSTFTSERNLIMHMERHEQGPSVTCHICERMFKNDLALKAHLRINHGKVKPECQICELVVEGDMHTHMKSHFAEKSVECSECHTIFGSKNQLIVHMRTHSGEKPFKCRVCSQSFGHKNVLKRHIRKHTGEKPFKCVLCENADNTYVAFSQLCHLKTHMKTIHKKDKTYVCEGCKEPFKVKFQLERHQEFCEKITPPTNFDEYEVEKKEKESYLLSHLRYLVAVLLKKISTEEKLTALGFDKRLIDNVLIASLKVANRKFYQSRKINELERMKLNIQEFLEWLLPENVLDGFKKECPSIENILEMIVSKYLKDN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01301099; iTF_01300466; iTF_01300253;
- 90% Identity
- iTF_01301099; iTF_01300466; iTF_01300253;
- 80% Identity
- iTF_01301099;