Rros017999.1
Basic Information
- Insect
- Rhingia rostrata
- Gene Symbol
- -
- Assembly
- GCA_949824845.1
- Location
- OX463757.1:76030805-76039584[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 8.7e-06 0.0011 20.0 3.0 3 23 53 73 52 73 0.98 2 11 6.7e-05 0.0084 17.2 2.4 2 23 84 105 83 105 0.97 3 11 9.2e-06 0.0012 19.9 0.3 1 23 111 134 111 134 0.96 4 11 1.5e-05 0.0019 19.3 1.3 1 23 140 162 140 162 0.99 5 11 0.0002 0.025 15.7 0.7 1 23 168 190 168 190 0.98 6 11 0.001 0.13 13.5 1.0 2 23 197 218 196 218 0.96 7 11 8e-05 0.01 17.0 0.7 2 23 225 247 224 247 0.96 8 11 5.1e-06 0.00065 20.7 0.8 2 23 279 300 278 300 0.97 9 11 0.00011 0.014 16.5 4.3 1 23 306 328 306 328 0.99 10 11 0.034 4.2 8.7 1.9 1 23 334 363 334 363 0.80 11 11 0.0001 0.013 16.6 0.2 1 20 369 388 369 390 0.96
Sequence Information
- Coding Sequence
- ATGAATACACGCGGAGCTTTGAAGAGGCAGCTCTCGAAAGATGATACATGTAGCTCACTGCGGGACAGTGGTATATCTATATCTGAAGGAGTCTCTGAAAACGAATTGGAAGTCAAACACAATCCTcctaagaagaagaaaaagaaaaacaatctaTGTCGCATCTGTAAGAAGACCTTTAGAGATAAAAAGGATTTGGAGCGTCACATTCACATCCATAAGCCCGATGTGATCAAACCTCGAGATAAGCAATGTCACATCTGCGTGAAGAAATTTAGGAATGGCACTGATTTACGACGCCACCTTCTCATTCATACAAATGAAAAGCCGCACGAATGCGAAATATGCAAGAAGGCCTATAggcaagaaataaatttaaacaatcACATCATTATGGTGCACACAAAGAGACGAGATTTTAAGTGTCAGTTTTGCAAGAAGGCGTTCGGAGTGAAGGCAAGTCTGAAACTTCATTTGCGGATGCATACAGGAGAGAATCCTTATTCCTGCCCGCACTGTGAAATGAAGTTCGGTCAAGGAGGGCAATTTGAAAAGCATCTAGCGACCCATGGAAAAGTCGAGAAGAAATCTTGTGAACTCTGTTTCTCTACGTTTACCAGTGAACGAAATTTAATAATGCACATGGAACGTCATGAGCAGGGCCCGAGTGTAACATGCCATATCTGCGAACGTATGTTCAAGAATGACTTGGCTTTAAAGGCTCATCTACGTATAAACCATGGAAAGGTGAAACCCGAATGCCAGATTTGTGAATTGGTCGTCGAAGGAGACATGCACACGCATATGAAGTCTCATTTTGCGGAAAAGTCCGTTGAATGCAGTGAATGCCATACGATATTTGGCTCGAAGAATCAGTTAATCGTTCATATGAGGACGCACTCGGGAGAGAAGCCGTTTAAGTGCAGGgtCTGCTCCCAAAGCTTTGGACATAAGAATGTTCTCAAGCGGCACATCAGAAAGCATACCGGGGAAAAACCATTCAAATGTGTTTTATGTGAAAATGCCGATAACACTTACGTAGCATTCTCTCAATTGTGTCATCTGAAAACACATATGAAAACGATTCATAAAAAAGATAAGACCTACGTTTGCGAAGGCTGCAAAGAGccatttaaagtgaaatttcaaCTCGAGAGACATCAAGagttttgtgaaaaaataacACCACCAACTAATTTTGATGAATAtgaagtagaaaaaaaagagaaggaATCATACTTACTATCACACCTCAGATATCTTGTAGCAGTGCTTTTGAAAAAGATATCCACCGAAGAGAAGCTTACAGCACTTGGGTTCGACAAAAGACTTATAGACAATGTACTAATAGCATCGCTAAAAGTTGCTaatcgcaagttctaccaaagtagaaaaataaaCGAGTTAGaacgaatgaaattaaatattcagGAATTTTTAGAATGGCTTCTCCCTGAAAATGTGTTGGATGGTTTTAAAAAGGAGTGCCCATCCATAGAAAATATTCTAGAGATGATAGTCTCAAAGTATTTGAAAGACAATTAA
- Protein Sequence
- MNTRGALKRQLSKDDTCSSLRDSGISISEGVSENELEVKHNPPKKKKKKNNLCRICKKTFRDKKDLERHIHIHKPDVIKPRDKQCHICVKKFRNGTDLRRHLLIHTNEKPHECEICKKAYRQEINLNNHIIMVHTKRRDFKCQFCKKAFGVKASLKLHLRMHTGENPYSCPHCEMKFGQGGQFEKHLATHGKVEKKSCELCFSTFTSERNLIMHMERHEQGPSVTCHICERMFKNDLALKAHLRINHGKVKPECQICELVVEGDMHTHMKSHFAEKSVECSECHTIFGSKNQLIVHMRTHSGEKPFKCRVCSQSFGHKNVLKRHIRKHTGEKPFKCVLCENADNTYVAFSQLCHLKTHMKTIHKKDKTYVCEGCKEPFKVKFQLERHQEFCEKITPPTNFDEYEVEKKEKESYLLSHLRYLVAVLLKKISTEEKLTALGFDKRLIDNVLIASLKVANRKFYQSRKINELERMKLNIQEFLEWLLPENVLDGFKKECPSIENILEMIVSKYLKDN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01301313;
- 90% Identity
- iTF_01301313;
- 80% Identity
- iTF_01301313;