Rcam005664.1
Basic Information
- Insect
- Rhingia campestris
- Gene Symbol
- clz9
- Assembly
- GCA_932526435.1
- Location
- CAKOBE010000039.1:5424882-5426705[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.9e-10 2.3e-07 31.3 0.0 3 39 22 59 20 62 0.89
Sequence Information
- Coding Sequence
- ATGACCCGGGCAAGTGAGAAGCACGCTAAGGACAAGAAGAAACGTTTCATTTTATATAGCGGCACAGATTTGGAACAAGCCTTATTTGAAATTCGTCAAAACAAACTGCCAATAAGAGAAGCGGCAAGAAGGTTTAATATTCCAAGGACGACTCTTCAGGACCGAGTTCACAACAGAACCGCGGATAATATTGGGAAATTCGGTCCCTGCCCTGTGCTCTCTGCAGAAGAAGAAAACAAGCTCAAAAACTGGCTTATAAATCTAGCGAAATGTGGTTTTCCACAGACCCGTGAAAACCTCTTGAAAACGGTTCAAGATATTCTCCAAGAAGAAGGCCGCAAAACTCCTTTCAAGGACAGCAAATCCGGTAAGAAATGGTACTACGGTTTTATGCGACGCCATCCCGATTTAAGCCTACGAACCGCTGAAACTGTGTCTAAAAGCCGCGCTCAAGTAACAGAGGAAGCAATAAGAAAATGGTTTAGAGAGCTCAAAGAATACTTAACAGAAGAAGATGCTTTAGACATTCTTGAGGATTCTTCTAgaatttttaacgccgatgaaacgggtttcagcatggctccgaaaactggaaatgtcattgctccaaaaggaatcaaaaacctttacgaaatcaagacagcaaatgaaaaagagaacttaactgtgctgatgactttttcagcagatggaagaacccttcctccaatggtggttttgccttataaaaggtcccctaactggctgaaattagtgcaaaataagaagcctgactgggtttttggcaagacggacagtggatggatgcggggggaaacttttctgcaatttgtgaaagagggtctgaacgtttggatttccaaaaataatattaaacgtccagttcttttttttgtcgatggacacgcttcccacatgtcgcttgaattaagctacttttgcagcagcgaaaacataattttgtatgcacttcctccaaataccacccatattcttcagccggctgatgtgggagcttttaaaggcctgaagTCGGATTATAAAAATATTTTAAACGAATGGCGCAAACGTTCGGGTAGTCACGGCAGCACAATGAATAAGGAGAGTTTTTGTGGTGTGTTAGATGAGCTCCTGAATTACAAGGATAGGACGACCATCATACAAAATGCTTTCAAAAAATGTGGAATATTTCCATTTGATCCGAATGCCGTCGACTACTCGAAATGTATTAAAAATGCGTTAGAAGTTTTAAATCTTGGTGCTGATGTTGGCAGTGGTTCAAGTGGTGATTCTCGTGGTAAATCTGGAGATGGTTCTGACGGTAATTCTGGTGGCGCTGGTGATTCTGCGGGCAATTTTGGTCCAGATTTTGGTCGTGTGTCTGCTCGCGACCCTGAAAATGATGCTGATTGTTTGGATTTTGATGAAGATGGCGATCTAGGTCTAGGAAATTGTCTTAATGAGGACTTTGCGGTCAACATCGATTGCGATATAGGCAGCATTGTGAATGTTGGAAGTGGTAATGCTAAAAATATTCCACATGCAAGTTTTTTAGAAGCCGAAAGAGTAATACTTCATCTAAAAGATGATCTCCAAAATAAAAATATCGACCATAAAGTTGTGCTTGAAGTTATTCGTCAGGCTAAACAAACAGTTTCTGGCGATTCTCAAAGTACCCATGATATTGAAGGGATCTACGAAGTTACCTCCGATGGCACATTGTTAAGAGTATTTCAACCCAATAAAGACAGTGTTCAAGAAGCTTCCTTACCAGATAAAAGTCCACACGATTGGGAAGCAGTCATAGGTAGCCATAACTTTTAA
- Protein Sequence
- MTRASEKHAKDKKKRFILYSGTDLEQALFEIRQNKLPIREAARRFNIPRTTLQDRVHNRTADNIGKFGPCPVLSAEEENKLKNWLINLAKCGFPQTRENLLKTVQDILQEEGRKTPFKDSKSGKKWYYGFMRRHPDLSLRTAETVSKSRAQVTEEAIRKWFRELKEYLTEEDALDILEDSSRIFNADETGFSMAPKTGNVIAPKGIKNLYEIKTANEKENLTVLMTFSADGRTLPPMVVLPYKRSPNWLKLVQNKKPDWVFGKTDSGWMRGETFLQFVKEGLNVWISKNNIKRPVLFFVDGHASHMSLELSYFCSSENIILYALPPNTTHILQPADVGAFKGLKSDYKNILNEWRKRSGSHGSTMNKESFCGVLDELLNYKDRTTIIQNAFKKCGIFPFDPNAVDYSKCIKNALEVLNLGADVGSGSSGDSRGKSGDGSDGNSGGAGDSAGNFGPDFGRVSARDPENDADCLDFDEDGDLGLGNCLNEDFAVNIDCDIGSIVNVGSGNAKNIPHASFLEAERVILHLKDDLQNKNIDHKVVLEVIRQAKQTVSGDSQSTHDIEGIYEVTSDGTLLRVFQPNKDSVQEASLPDKSPHDWEAVIGSHNF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01300784; iTF_01300785; iTF_01300786; iTF_01300787; iTF_00315101; iTF_00312533; iTF_00315097; iTF_00315098; iTF_00312539; iTF_00315099;
- 90% Identity
- iTF_01300785;
- 80% Identity
- -