Rros017728.1
Basic Information
- Insect
- Rhingia rostrata
- Gene Symbol
- clz9
- Assembly
- GCA_949824845.1
- Location
- OX463757.1:71919977-71921509[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.8e-10 1.6e-07 31.6 0.0 3 39 22 59 20 62 0.89
Sequence Information
- Coding Sequence
- ATGACCCGGGCAAGTGAGAAGCACGCTAAGGACAAGAAGAAACGTTTCATTTTATATAGCGGCACAGATTTGGAACAAGCCTTATTTGAAATTCGTCAAAACAAACTGCCAATAAGAGAAGCGGCAAGAAGGTTTAATATTCCAAGGACGACTCTTCAGGACCGAGTTCACAACAGAACCGCGGATAATATTGGGAAATTCGGTCCCTGCCCTGTGCTCTCTGCAGAAGAAGAAAACAAGCTCAAAAACTGGCTTATAAATCTAGCGAAATGTGGTTTTCCACAGACCCGTGAAAACCTCTTGAAAACGGTTCAAGATATTCTCCAAGAAGAAGGCCGCAAAACTCCTTTCAAGGACAGCAAACCCGGTAAGAAATGGTACTACGGTTTTATGCGACGCCATCCCGATTTAAGCCTACGAACCGCTGAAACTGTGTCTAAAAGCCGCGCTCAAATAACAGAGGAAGCAATAAGAAAATGGTTTAGAGAGCTCAAAGaatacttaacagaagaagATGCTTTAGACATTCTTGAGGATTCTTCTAGAATTTTTAACGCCGATGAAACGGGTTTCAGCATGGCTCCGAAAACTGGAAATGTCATTGCTCCAAAAGGAATCAAAAACCTTTACGAAATCAAGACAGCAAATGAAAAAGAGAACTTAACTGTGCTGATGACTTTTTCAGCAGATGGAAGAACCCTTCCTCCAATGGTGGTTTTGCCTTATAAAAGGTCCCCTAACTGGCTGAAATTAGTGCAAAATAAGAAGCCTGACTGGGTTTTTGGCAAGACGGACAGTGGATGGATGCGGGGGGAAACTTTTCTGCAATTTGTGAAAGAGGGTCTGAACGTTtggatttccaaaaataatattaaacgtccagttcttttttttgtcgatgGACACGCTTCCCACATGTCGCTTGAATTAAGCTACTTTTGCAGCAGcgaaaacataattttgtatgcaCTTCCTCCAAATACCACCCATATTCTTCAGCCGGCTGATGTGGGAGCTTTTAAAGGCCTGAAGTcggattataaaaatattttaaacgaaTGGCGCAAACGTTCGGGTAGTCACGGCAGCACAATGAATAAGGAGAGTTTTTGTGGTGTGTTAGATGAGCTCCTGAATTACAAGGATAGGACGACCATCATACAAAATGCTTTCAAAAAATGTGGAATATTTCCATTTGATCCGAATGCCGTCGACTACTCGAAATGTATTAAAAATGCGTTAGAAGTTTTAAATCTTGGTGCTGATGTTGGCAGTGGTTCAAGTGGTGATTCTCGTGGTAAATCTGGAGATGGTTCTGACGGTAATTCTGGTGGCGCTGGTGATTCTGCGGGCAATTTTGGTCCAGATTTTGGTCGTGTGTCTGCTCGCGACCCTGAAAATGATGCTGATTGTTTGGATTTTGATGAAGATGGCGATCTAGGTCTAGGAAATTGTCTTAATGAGGACTTTGCGGTCAACATCGATTGCGATATAGGCAGCATGCTAAAAATATTCCACATGCAAGTTTTTTAG
- Protein Sequence
- MTRASEKHAKDKKKRFILYSGTDLEQALFEIRQNKLPIREAARRFNIPRTTLQDRVHNRTADNIGKFGPCPVLSAEEENKLKNWLINLAKCGFPQTRENLLKTVQDILQEEGRKTPFKDSKPGKKWYYGFMRRHPDLSLRTAETVSKSRAQITEEAIRKWFRELKEYLTEEDALDILEDSSRIFNADETGFSMAPKTGNVIAPKGIKNLYEIKTANEKENLTVLMTFSADGRTLPPMVVLPYKRSPNWLKLVQNKKPDWVFGKTDSGWMRGETFLQFVKEGLNVWISKNNIKRPVLFFVDGHASHMSLELSYFCSSENIILYALPPNTTHILQPADVGAFKGLKSDYKNILNEWRKRSGSHGSTMNKESFCGVLDELLNYKDRTTIIQNAFKKCGIFPFDPNAVDYSKCIKNALEVLNLGADVGSGSSGDSRGKSGDGSDGNSGGAGDSAGNFGPDFGRVSARDPENDADCLDFDEDGDLGLGNCLNEDFAVNIDCDIGSMLKIFHMQVF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01299942;
- 90% Identity
- iTF_01300785;
- 80% Identity
- -