Rneb039786.1
Basic Information
- Insect
- Rhaphigaster nebulosa
- Gene Symbol
- Hr39
- Assembly
- GCA_948150685.1
- Location
- OX411310.1:123894885-123914494[+]
Transcription Factor Domain
- TF Family
- SF-like
- Domain
- zf-C4|SF-like
- PFAM
- AnimalTFDB
- TF Group
- Zinc-Coordinating Group
- Description
- The ligand binding domain of nuclear receptor steroidogenic factor 1 (SF-1): SF-1, a member of the nuclear hormone receptor superfamily, is an essential regulator of endocrine development and function and is considered a master regulator of reproduction. Most nuclear receptors function as homodimer or heterodimers, however SF-1 binds to its target genes as a monomer, recognizing the variations of the DNA sequence motif, T/CCA AGGTCA. SF-1 functions cooperatively with other transcription factors to modulate gene expression. Phospholipids have been determined as potential ligands of SF-1. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, SF-1 has a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD). [1, 8, 3, 11, 6, 5, 12, 10, 9, 2, 4, 7]
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.23 5.5e+03 -2.2 5.7 60 172 144 277 99 285 0.65 2 3 8.6e-09 0.00021 22.3 0.1 1 28 396 423 396 431 0.89 3 3 2.5e-69 6e-65 221.6 0.0 164 408 433 672 425 672 0.96
Sequence Information
- Coding Sequence
- ATGGAGGGCGGTGTCAAATGCAGGGCCACGCCTGCTGGGGTGGTCCTTAGTCTCCGTCCCGCGGAAAATGAACAAAAGTATTATCAACCCCAGTGCAATGGCGAGCTTATATCTTGCTCAAGCAGTGCATGTTCCGTTGTAGTAAGCAATGAACAAATGAATGTTGATGATGACTCATCAGCAGCTGATGCTGAAGTCAGCACCTTTACAAGTGAAACTGTTAACCTTAGGAATAGGCATGGTGAAGACCCGAGGATCCCAGTAGAAAGGCCGATGTCTTGGGAGGGTGAGCTGTCTGACTCAGAGGTTGCTACAATCAAACCGGAGCCAGAAGATGTGGCTGATACGATAGACAATCAAAATTCCAGCAAGGGCAACCAAACGAAAGGGGATAGTGAAGTGCCTCAGCCTTTGAAACTGAACAACGAGACAATCAATGAAAAAGTTTTGGACCAAACAAGGACAAATCATATTAATGCTCAAACCGAGCTTCCTCTCCTAGTGGATAAGATTTTGAGTAGCGGTAACTATCTGAAAGGAGCTGGTCCTACGCCCAGCCCTGACTCTGCCGTTTACTCCTGCTACTCTCCGACAGCTAGCCCTGTCACCTCCCGCCATATCTTGTCTTCCTCCTCCGGGATATCATCTCCATTCACGCCATCTTTATCGAGAAACAACAGTGATGCATCACAGTATGGTGGTTCTCAACATTCATCATGCTACAGTCACAGTTACTCGTCGGTATCAGTGTCTCCGACGCAGTTCTCTCCTACTCACTCTCCGATCCAGGGCAGGCACATCCCAAGGCCAGGTTTTCCCTCGCCTGTTCTCAACTCCAGGAGTGTCCACGACTATTCCATTCAAGATGATGGAAGTGTGCTTGAAGATAAATTCTCATCATTGACTGCTGATATGGTGCAGCATTCCGCTGGCCTCGCTTCACCAGGAATCAGCAGGCAGCAACTTATAAACAGCCCTTGCCCTATTTGTGGAGATAAAATCTCAGGATTCCACTATGGCATCTTTTCCTGTGAGAGCTGTAAAGGATTCTTTAAAAGAACAGTACAGAACAGGAAAAATTATGTCTGCCTCAGGGGATCCTCTTGCCCTGTCACTATTGCGACAAGAAAGAAGTGTCCAGCATGTAGGTTCGACAAGTGCTTAAACATGGGCATGAAGTTGGAAGCAATTAGGGAAGATCGGACACGAGGTGGTAGGAGCACCTACCAGTGCTCTTACACCGTGCCAGCCGGGCTCGTCGATCAAAAGTGTTCTGATTTAAGGCAAGAGCACCCCCAGCCAACTTCACTCATTCCTCCTCTCCTCCAGGAAATCATGGAAGTGGAACACCTTTGGCAGTACAATGAGGGGGAAGTGAGAGGGGGCGGGCGTGGAGGCCCTCAGAGTAGTGGAGGTGGCAACTCGACGGATCTCATGGCCAACCTGTGCAATATTGCTGACCATCGCCTCTATAAGATCGTCAAGTGGTGCAAGTCACTCCCGCTCTTCAAGAACATATCAATCGATGATCAGACTTCACTCCTCATCAACGCTTGGTGTGAACTTCTTCTGTTCTCATGCTGCTTCAGGTCGATGAGCTCTCCAGGTGAGATAAGGGTGTCCCTTGGCAAGTGCATTACGCTGCCCGAAGCTAGGACCCTTGGTCTCGGGCCGCCAATTGAGCGGATGCTAAACTTCACGGAGCACTTGAGGCGGCTGAGGGTAGACCGCTATGAATATGTTGCTATGAAGGTCATTGTTCTCTTGTCCTCTGACACGAGTGAATTAAGAGAACCAGAAAAGGTAAGAGCTTCCCAGGAAAAAGCGCTGCAAGCACTCCAGCATTACACTCTTGCCCATTATCCAGACATTCCGTCCAAGTTCGGAGAACTACTTCTTAGGATACCAGACCTACAAAGGACCTGTCAGGTTGGTAAAGAAATGCTTTCCATCAAAAGCAAAGAGGGAGAAGGACCCAGTTTCAATCTGCTCATGGAACTGTTGAGGGGTGACCACTGA
- Protein Sequence
- MEGGVKCRATPAGVVLSLRPAENEQKYYQPQCNGELISCSSSACSVVVSNEQMNVDDDSSAADAEVSTFTSETVNLRNRHGEDPRIPVERPMSWEGELSDSEVATIKPEPEDVADTIDNQNSSKGNQTKGDSEVPQPLKLNNETINEKVLDQTRTNHINAQTELPLLVDKILSSGNYLKGAGPTPSPDSAVYSCYSPTASPVTSRHILSSSSGISSPFTPSLSRNNSDASQYGGSQHSSCYSHSYSSVSVSPTQFSPTHSPIQGRHIPRPGFPSPVLNSRSVHDYSIQDDGSVLEDKFSSLTADMVQHSAGLASPGISRQQLINSPCPICGDKISGFHYGIFSCESCKGFFKRTVQNRKNYVCLRGSSCPVTIATRKKCPACRFDKCLNMGMKLEAIREDRTRGGRSTYQCSYTVPAGLVDQKCSDLRQEHPQPTSLIPPLLQEIMEVEHLWQYNEGEVRGGGRGGPQSSGGGNSTDLMANLCNIADHRLYKIVKWCKSLPLFKNISIDDQTSLLINAWCELLLFSCCFRSMSSPGEIRVSLGKCITLPEARTLGLGPPIERMLNFTEHLRRLRVDRYEYVAMKVIVLLSSDTSELREPEKVRASQEKALQALQHYTLAHYPDIPSKFGELLLRIPDLQRTCQVGKEMLSIKSKEGEGPSFNLLMELLRGDH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00373210;
- 90% Identity
- iTF_00165283;
- 80% Identity
- iTF_01298468;