Rlae001086.1
Basic Information
- Insect
- Rhamphomyia laevipes
- Gene Symbol
- nfxl1
- Assembly
- GCA_963920725.1
- Location
- OY987255.1:5049280-5052568[-]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 2 3.8e+04 -7.9 5.6 15 19 177 181 176 181 0.81 2 19 0.18 3.4e+03 -0.7 0.7 4 10 212 218 211 218 0.93 3 19 3.1e-08 0.00059 20.8 17.0 1 19 226 243 226 243 0.99 4 19 1.5 2.8e+04 -3.7 1.2 6 10 269 273 268 273 0.87 5 19 2.1e-08 0.00039 21.4 14.3 1 19 279 298 279 298 0.96 6 19 1.4 2.6e+04 -3.6 1.8 6 10 323 327 322 327 0.89 7 19 3.2e-06 0.06 14.4 10.0 1 19 333 351 333 351 0.97 8 19 1.2 2.2e+04 -3.3 0.5 1 9 376 383 376 383 0.61 9 19 4.1e-08 0.00078 20.5 8.6 1 18 386 403 386 404 0.96 10 19 0.086 1.6e+03 0.3 1.2 1 10 413 422 413 422 0.93 11 19 2 3.8e+04 -5.0 2.3 5 10 427 432 427 432 0.91 12 19 4.1e-05 0.79 10.9 16.1 1 18 438 455 438 456 0.92 13 19 8.4e-08 0.0016 19.5 10.6 3 18 467 482 465 483 0.91 14 19 1.6 3e+04 -3.8 1.0 5 10 511 516 511 516 0.92 15 19 1.3 2.4e+04 -3.5 11.7 9 18 529 538 520 539 0.89 16 19 0.014 2.6e+02 2.8 5.4 3 12 550 559 542 559 0.83 17 19 3e-06 0.057 14.5 4.5 1 11 628 638 628 639 0.96 18 19 0.04 7.6e+02 1.3 14.6 3 19 668 684 667 684 0.93 19 19 8.8e-07 0.017 16.2 10.3 1 17 735 753 735 755 0.86
Sequence Information
- Coding Sequence
- ATGCccaaacataaacaaaaaaacaaaaacgccGGATCCTTGAGtactacaaataatttaacCTTGACCTCATCGTCTGCATCTGCAACTGTAATcgcaaaaaatgaattatcattaaaaaaatttgaagaaattcgtactaaaaatgaagaaaaagcaaaatcaattataaaaaataaagattatgaATCTAGTTCTGATGAAgatgatttaaatgaaaaagatattttaGATGGGTTATTTCGCAATTATTCAGGGAATACTCAACaactttcaaaaattcaaacatttttacaaaattttctacaatCTGGTTCGGcaatttgtttaatttgtatAGGAACAGTTAAACGAACTGATTCAATTTGGTCATGCAAGAATTGTTATTgcttttttcatttgaattgtTTAAAACGTTGGTCTAATGATAGTATAGCACTACAGAAATTAAATGCTGATCAAAACCAAAGTTATTACAATAATCAGGgagaattcataattaaaaaagtaaaaacaattCGGTGGTGTTGTCCAAAATGTCGTAGAGATTACCCACCAGGTGATGTACCCAAACAATATGAGTGTTTTTGTGCAAAAGAAATAAATCCACAATATCATCCATGGTTAATAGCACATTCCTGTGgcgaaaaatgtgaaaaatatttagaaccAGATTGTGGCCATAAATGTTTATTACTTTGTCATCctggcCCGTGTCCACCATGTCcacaaaatataacaatttcatGCAAATGTGAAAAATCAGCTCTTAAAACTATAAGATGTTTTCAGAAATCTTGGAGTTGTGAATCAAaatgcctaaaaatgttaatttgtgGAATACACAAATGTGACCAAATATGCCATCCAACAGGAAAATGTCCACCGTGTACAAAACGAAGTAAACAAAAATGTCAGTGTGGTAATGAAACTACCGAAAGGAATTGTTCTCAATTCAAATGGCAATGTAAAAAAgtatgtaataaattattgtcttgtagtttacataaatgtaaaaaaatttgtcattcTGATGATTGTGGTGATTGTCCATTAGGTTTGCCAAGAGCATGTCCTTGtggaaaaaatAAAACAATCGCTCCATGTAGTGAGATTATTGATACGTGTGGAGATACTTGTCAAAAAGTTTTAGCTTGCGGACTGCATTACTGTACTCAGAGATGTCATAAAGGGGATTGTAGTTtgtgttTAGCAATTGTTGATAAGAAATGCCGCTGTGGATTGCATAAAAAAGAACAACCATGCACAAAAACATTTACATGtgaaacaaaatgtaaattattgagAGAATGCCAAAAACATGCTTGCAGTAAAAAgtgcTGTGATGGACAATGTCCACCATGTGATAAAGTTTGTAATAAAACACTTTCATGTAAAAAACATAAGTGCAAATCAATTTGTCACGATGGATCATGCTATCCATGTGATTTAAAATCATCAGTGAAATGTCGATGTGGAAATACATCAGTAACAGTTCCATGTGGacgagaaaaaaaaactaaaataccaAAATGTTTACAATTATGCAGaataccATCAAAATGTCATCATGAAAATCCCCATAAATGTCATATGAATGATTGTCCACCTTGTGGACAAAAGTGTGGCTTACTAACTACCTTATGTGTTCATCCATGCGAAGCAAAATGTCATGATGCaattaaagttgaaattaaaaatccaaaagGGACAACTATTTGGGATTGGCAACAAGAAACTtttgaatataaaaaagcaCCACATCCCCCGTGTATAATTCCAGTAATGGTATCTTGTATTGGTGGTCATGAAATAATGAATTGGCCATGTTGGAATTCAAAACCTTCATCATGTCAACGGGAATGTGgacgaaaattaaaatgtggAAATCATACTTGTTATCGAATATGTCATGCAGTTTCAGATTTGTCTAACCAAGatgaACAAGAAGGTTGTATTTCTTGTACCGaagaatgtaaaattattcaacCAGATGGCTGTATTCATCCATGTAAGAAACGCTGTCACCCACCTCCATGCGAAATATGCTCTGTTAACATTAAAACAAACTGCCATTGTGGTCTCAGTcaagtttattataaatgcaatgatttttatttatctgaCAATTCTGGAATTTCTTTAATTGAGAAAAGAGAGAAATTAAAATGTTGTGGAAATCGAtgcattaaaaattatTCATGCGGACATAGATGTGCAGCAATTTGTCATTCTGGTTTATGTCCAAATCCagaaaattgtaagaaaaaagtgaaaatatattgtttGTGTAAAAgtcttaaaattgaaatatcttGTGAAAAACATCGTAATGgtactaaatttattgaatgcGATGATACATGTGCAATGAAAAAAGCAGAAGAAACTcgtattaaaaaagaaatggaaGATAAACACAGACAACTTGAAGAGGAAAAGAATCGAATCGAATTAGAGCAATTCGAAAAGAAATTtggaaagaaaaaatttaaggagagaaaaattattgaaattgcaccaaaaacaaatattgaaattaaaattatattgggaGTTGGAGGCTTTCTTACTATATTAGCTTTATCTGCATTGATATACATAACTATATGGATTTAA
- Protein Sequence
- MPKHKQKNKNAGSLSTTNNLTLTSSSASATVIAKNELSLKKFEEIRTKNEEKAKSIIKNKDYESSSDEDDLNEKDILDGLFRNYSGNTQQLSKIQTFLQNFLQSGSAICLICIGTVKRTDSIWSCKNCYCFFHLNCLKRWSNDSIALQKLNADQNQSYYNNQGEFIIKKVKTIRWCCPKCRRDYPPGDVPKQYECFCAKEINPQYHPWLIAHSCGEKCEKYLEPDCGHKCLLLCHPGPCPPCPQNITISCKCEKSALKTIRCFQKSWSCESKCLKMLICGIHKCDQICHPTGKCPPCTKRSKQKCQCGNETTERNCSQFKWQCKKVCNKLLSCSLHKCKKICHSDDCGDCPLGLPRACPCGKNKTIAPCSEIIDTCGDTCQKVLACGLHYCTQRCHKGDCSLCLAIVDKKCRCGLHKKEQPCTKTFTCETKCKLLRECQKHACSKKCCDGQCPPCDKVCNKTLSCKKHKCKSICHDGSCYPCDLKSSVKCRCGNTSVTVPCGREKKTKIPKCLQLCRIPSKCHHENPHKCHMNDCPPCGQKCGLLTTLCVHPCEAKCHDAIKVEIKNPKGTTIWDWQQETFEYKKAPHPPCIIPVMVSCIGGHEIMNWPCWNSKPSSCQRECGRKLKCGNHTCYRICHAVSDLSNQDEQEGCISCTEECKIIQPDGCIHPCKKRCHPPPCEICSVNIKTNCHCGLSQVYYKCNDFYLSDNSGISLIEKREKLKCCGNRCIKNYSCGHRCAAICHSGLCPNPENCKKKVKIYCLCKSLKIEISCEKHRNGTKFIECDDTCAMKKAEETRIKKEMEDKHRQLEEEKNRIELEQFEKKFGKKKFKERKIIEIAPKTNIEIKIILGVGGFLTILALSALIYITIWI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00644709; iTF_00643766;
- 90% Identity
- -
- 80% Identity
- -