Rlae023708.1
Basic Information
- Insect
- Rhamphomyia laevipes
- Gene Symbol
- -
- Assembly
- GCA_963920725.1
- Location
- OY987256.1:46834548-46836407[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 6 0.18 1.1e+03 0.8 0.1 27 52 232 257 229 258 0.76 2 6 0.002 13 7.1 0.1 23 47 256 280 251 285 0.84 3 6 0.014 90 4.4 0.1 21 44 282 305 280 309 0.90 4 6 0.0046 29 5.9 0.0 21 48 310 337 304 340 0.87 5 6 0.00011 0.68 11.2 0.0 22 44 342 366 338 374 0.82 6 6 0.023 1.4e+02 3.7 0.1 26 48 432 453 428 461 0.84
Sequence Information
- Coding Sequence
- atgaatattaaagttGAAAAAGATATTTGTCGAgtAACTAAAAATGATGGATTGCCaatgtttttttgtaatcattGTACAGCGCGTCTGAAAATTGCTTATGATTTCCGTAAATTAAGTATAGAATCAGATAATCAGATGCGGACATTTCTTACAAAAATCAATAACGAATTTAATAAAGTAGCTCAATCAAAAACAACATTTGAAATTGAGAACTATGAATTAGATATATTAATTGAAGCTGGTTATAAACCAGAAAttctaaatgaattaaaaagttCGTCGGCTGCATCGttagttaaaaaaatgaaaaatgaagaaaataatgatcatgattataacgaaaataaaaatgatattcacagcaatgatgatgaaaatagtATTATAGAACTACAACAAGATGATACACAGTTTTCAGCTGAATATATTGATATGGATAGTGATGATATTGTAAATCAGttcgatgatgatgatattgataataatgaagAAACTAATCAATTAGCTATAAGTGAagataataattcaaatgaatcaacagaagattttaaaattgaaagttataGTGCTGATGTTTCTTCACTAGTTGATGGTTGTTTTAGTGAGAGCAAAGAAGACGATGATCAtagtgaatttttaatatttaaagataaaacgaaaaatataaaaacaattggTTGCGAACAGATTTGCCAAAAATGTGGTAAAACATTTAGTACTCGTACAAATTTATTACGTCATTTGAAAATACATGATGGTGCTAGACCGTATACATGCAAAATATGTAATTCATCATTTACACAAAAAGGTTCATTAGATCGTCATCATTTATTACATACTGGCGAGAAACCATTTCGTTGTAATCTATGTACAAGAGCATTTACACAAAGTAAAACTTTACAATTTCATATGAGAACACATTCAGGTGAGAAACCATTTTCTTGTAAGATATGtggttttcaatttttgaaaaaggaaGGATTAAAgCGTCACATGGACTCAAAACATGATGAATTATATGaacaaccaaaaaattatacatgtccaatttgttttaaaacagTTCAACGTAAAAAGAATTTTGATGATCATATGCGAAATCATTCAAAAAAAGATGTAATTTATACATGTGAAGAATGTAATAAAACGTTTCAAACTCAGGAAAGACTAGATATTCATTATCGTTTGCATACAGGCGATTTACCATATAAATGTGATAAATGTAATAAAGCTTTTCCCCGAAAACATACATTGGGCGCTCATTTAAATACACATTTGGGTAAACAATTTAAATGTCCAATTTGTGATCGTGGATTTACCCAGAAACATAGAATGAAAGCACATATGGAAAGACATGATCAGATATTTAAATGTGGAGTTTGTTCACAGAATTTTCAGAGCAAacACGAAGTTGTTCAACACATGAGAGTACATAAAGGTGATTCAAtggaattaatatataaatgtaatcatTGTTCAAATGGTTTTAATACAGACGAAGAACTTCAAACACATATTACAGACGAACATCctcaataa
- Protein Sequence
- MNIKVEKDICRVTKNDGLPMFFCNHCTARLKIAYDFRKLSIESDNQMRTFLTKINNEFNKVAQSKTTFEIENYELDILIEAGYKPEILNELKSSSAASLVKKMKNEENNDHDYNENKNDIHSNDDENSIIELQQDDTQFSAEYIDMDSDDIVNQFDDDDIDNNEETNQLAISEDNNSNESTEDFKIESYSADVSSLVDGCFSESKEDDDHSEFLIFKDKTKNIKTIGCEQICQKCGKTFSTRTNLLRHLKIHDGARPYTCKICNSSFTQKGSLDRHHLLHTGEKPFRCNLCTRAFTQSKTLQFHMRTHSGEKPFSCKICGFQFLKKEGLKRHMDSKHDELYEQPKNYTCPICFKTVQRKKNFDDHMRNHSKKDVIYTCEECNKTFQTQERLDIHYRLHTGDLPYKCDKCNKAFPRKHTLGAHLNTHLGKQFKCPICDRGFTQKHRMKAHMERHDQIFKCGVCSQNFQSKHEVVQHMRVHKGDSMELIYKCNHCSNGFNTDEELQTHITDEHPQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01297788;
- 90% Identity
- iTF_01297788;
- 80% Identity
- iTF_01297788;