Basic Information

Insect: Rhamphomyia laevipes
Gene Symbol: -
Assembly: GCA_963920725.1
Location: OY987256.1:46834548-46836407[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 2.1e-07 2.4e-05 25.6 1.7 3 23 232 252 230 252 0.97

2 10 7.4e-05 0.0086 17.5 2.8 1 23 258 280 258 280 0.97

3 10 5e-05 0.0058 18.1 3.4 1 23 286 308 286 308 0.99

4 10 0.00081 0.094 14.3 1.5 1 23 314 337 314 337 0.96

5 10 7.1e-05 0.0082 17.6 1.8 1 23 347 369 347 369 0.99

6 10 4.7e-05 0.0055 18.1 1.3 1 23 376 398 376 398 0.98

7 10 1.7e-06 0.0002 22.7 2.1 1 23 404 426 404 426 0.99

8 10 3.3e-06 0.00038 21.8 2.4 1 23 431 453 431 453 0.98

9 10 0.00032 0.037 15.5 1.7 1 23 457 479 457 479 0.99

10 10 0.0012 0.14 13.7 1.2 1 23 488 511 488 511 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	2.1e-07	2.4e-05	25.6	1.7	3	23	232	252	230	252	0.97
2	10	7.4e-05	0.0086	17.5	2.8	1	23	258	280	258	280	0.97
3	10	5e-05	0.0058	18.1	3.4	1	23	286	308	286	308	0.99
4	10	0.00081	0.094	14.3	1.5	1	23	314	337	314	337	0.96
5	10	7.1e-05	0.0082	17.6	1.8	1	23	347	369	347	369	0.99
6	10	4.7e-05	0.0055	18.1	1.3	1	23	376	398	376	398	0.98
7	10	1.7e-06	0.0002	22.7	2.1	1	23	404	426	404	426	0.99
8	10	3.3e-06	0.00038	21.8	2.4	1	23	431	453	431	453	0.98
9	10	0.00032	0.037	15.5	1.7	1	23	457	479	457	479	0.99
10	10	0.0012	0.14	13.7	1.2	1	23	488	511	488	511	0.93

Sequence Information

Coding Sequence: atgaatattaaagttGAAAAAGATATTTGTCGAgtAACTAAAAATGATGGATTGCCaatgtttttttgtaatcattGTACAGCGCGTCTGAAAATTGCTTATGATTTCCGTAAATTAAGTATAGAATCAGATAATCAGATGCGGACATTTCTTACAAAAATCAATAACGAATTTAATAAAGTAGCTCAATCAAAAACAACATTTGAAATTGAGAACTATGAATTAGATATATTAATTGAAGCTGGTTATAAACCAGAAAttctaaatgaattaaaaagttCGTCGGCTGCATCGttagttaaaaaaatgaaaaatgaagaaaataatgatcatgattataacgaaaataaaaatgatattcacagcaatgatgatgaaaatagtATTATAGAACTACAACAAGATGATACACAGTTTTCAGCTGAATATATTGATATGGATAGTGATGATATTGTAAATCAGttcgatgatgatgatattgataataatgaagAAACTAATCAATTAGCTATAAGTGAagataataattcaaatgaatcaacagaagattttaaaattgaaagttataGTGCTGATGTTTCTTCACTAGTTGATGGTTGTTTTAGTGAGAGCAAAGAAGACGATGATCAtagtgaatttttaatatttaaagataaaacgaaaaatataaaaacaattggTTGCGAACAGATTTGCCAAAAATGTGGTAAAACATTTAGTACTCGTACAAATTTATTACGTCATTTGAAAATACATGATGGTGCTAGACCGTATACATGCAAAATATGTAATTCATCATTTACACAAAAAGGTTCATTAGATCGTCATCATTTATTACATACTGGCGAGAAACCATTTCGTTGTAATCTATGTACAAGAGCATTTACACAAAGTAAAACTTTACAATTTCATATGAGAACACATTCAGGTGAGAAACCATTTTCTTGTAAGATATGtggttttcaatttttgaaaaaggaaGGATTAAAgCGTCACATGGACTCAAAACATGATGAATTATATGaacaaccaaaaaattatacatgtccaatttgttttaaaacagTTCAACGTAAAAAGAATTTTGATGATCATATGCGAAATCATTCAAAAAAAGATGTAATTTATACATGTGAAGAATGTAATAAAACGTTTCAAACTCAGGAAAGACTAGATATTCATTATCGTTTGCATACAGGCGATTTACCATATAAATGTGATAAATGTAATAAAGCTTTTCCCCGAAAACATACATTGGGCGCTCATTTAAATACACATTTGGGTAAACAATTTAAATGTCCAATTTGTGATCGTGGATTTACCCAGAAACATAGAATGAAAGCACATATGGAAAGACATGATCAGATATTTAAATGTGGAGTTTGTTCACAGAATTTTCAGAGCAAacACGAAGTTGTTCAACACATGAGAGTACATAAAGGTGATTCAAtggaattaatatataaatgtaatcatTGTTCAAATGGTTTTAATACAGACGAAGAACTTCAAACACATATTACAGACGAACATCctcaataa
Protein Sequence: MNIKVEKDICRVTKNDGLPMFFCNHCTARLKIAYDFRKLSIESDNQMRTFLTKINNEFNKVAQSKTTFEIENYELDILIEAGYKPEILNELKSSSAASLVKKMKNEENNDHDYNENKNDIHSNDDENSIIELQQDDTQFSAEYIDMDSDDIVNQFDDDDIDNNEETNQLAISEDNNSNESTEDFKIESYSADVSSLVDGCFSESKEDDDHSEFLIFKDKTKNIKTIGCEQICQKCGKTFSTRTNLLRHLKIHDGARPYTCKICNSSFTQKGSLDRHHLLHTGEKPFRCNLCTRAFTQSKTLQFHMRTHSGEKPFSCKICGFQFLKKEGLKRHMDSKHDELYEQPKNYTCPICFKTVQRKKNFDDHMRNHSKKDVIYTCEECNKTFQTQERLDIHYRLHTGDLPYKCDKCNKAFPRKHTLGAHLNTHLGKQFKCPICDRGFTQKHRMKAHMERHDQIFKCGVCSQNFQSKHEVVQHMRVHKGDSMELIYKCNHCSNGFNTDEELQTHITDEHPQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01298059;
90% Identity: iTF_01298059;
80% Identity: iTF_01298059;