Rlae002347.1
Basic Information
- Insect
- Rhamphomyia laevipes
- Gene Symbol
- bab1
- Assembly
- GCA_963920725.1
- Location
- OY987255.1:28404347-28405753[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 4.6e-17 3.4e-14 53.3 0.0 1 43 28 71 28 73 0.95 2 3 0.73 5.3e+02 1.5 1.7 2 25 164 190 163 191 0.71 3 3 7.2 5.2e+03 -1.7 0.0 22 30 195 203 194 204 0.90
Sequence Information
- Coding Sequence
- ATGTGGCAAAAATGTTGgaatacaaatcaaaatttaatgcatCATTTGCGATTTCGTGAACGTGGACCATTAAAATCATGGCGACCCGAAACAATGGCCGAAGCAATTTTTAGTGTACTAAAAGAAGGTCTTTCATTATCACAAGCCGCCCGAAAATATGATATTCCATATCCTACATTTGTTCTATATGCTAATCGAGTACATAACATGTTAGGACCATCAATAGATGGCGGTACAGATTTGCGACCTAAAGGACGTGGTCGTCCACAAAGGATTCTGCTTGGCATATGGCCGGATGAACATATTAAGGGAGTTATTAAAACTGTTGTTTTTCGTGATGCAAAAGAACTGAAAGAAGAAAGTCAATTGCATATGCAGTACGGACGGCATtcgccTGTTTTTCCTTTCcaagaaaatccattaaatTATCCAGGAGGTCCATGTCCTAATGGTATGCCATCTCAAGGTGGGAATAGTGAATCAATGAGTCCTGAAGCAACAGCAGCAGCTGTTGCCGCTGTTGCACATGGAATACGACAACAAATGCAAATGGCCGCTGCAGCACAACATCATCCTGATTCTGCAGCAAATCTTTATAACCTACCGGCACATTTACAAGCACATGTTGCCGGAGTTTCAATACCAAAGCAAAGTTCGCCAGCATCAGCTGGTAGTGGTGGTGGCGGTGATAGAAGTAGCGTAGGTGGAGGGAGTAGTGGTGGTCAAATGAACTCAAATTCACAGAGACATTCGTCACCACAAATGCTTCCAAATCCATCGTCTTTAGCAAGTTTAGCTGGTATTCCAGGTTTACATATTATCCCAGGTCTAAGTAGTTCACAGTCTAATCAATCAAGTGGAGGTGGTGGCGGTGGTAGCGGAAATAGTGGACATCATATAAGTACATTTTCTTCCAGCAATTCAAGTAGtcatcatcaacaacaccaTCATCAATCCGGAAGTGGTGGTAGTCATCAacatcaccatcatcatcacaGCAGTTTACATTCAAATCAATCACGTAATCAATCACCTGCTGAATCTGCACATGACTTACGAATGAACAGTCCGGATGAGAGTCCGCTTCATTCACCACTCGAAATGTCTTTAGAACCAGCTGTCAATTTAGCTGTAGGTGTTAGTGGTATGGCATATAAACCCTCACGTGGATATTCATCACCACGACCTGAACATTTATTCCAAGAAGATATTGCCGAATTGGTAGGTGCCGCTACATCTGTATCCCGTAATTGCCCACCAAATAtgagtattaataattttaaagagcCATCGCCTAGCATTAAAATAGAACCTATTGCTGAATGTCGAGGTGATTAG
- Protein Sequence
- MWQKCWNTNQNLMHHLRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSIDGGTDLRPKGRGRPQRILLGIWPDEHIKGVIKTVVFRDAKELKEESQLHMQYGRHSPVFPFQENPLNYPGGPCPNGMPSQGGNSESMSPEATAAAVAAVAHGIRQQMQMAAAAQHHPDSAANLYNLPAHLQAHVAGVSIPKQSSPASAGSGGGGDRSSVGGGSSGGQMNSNSQRHSSPQMLPNPSSLASLAGIPGLHIIPGLSSSQSNQSSGGGGGGSGNSGHHISTFSSSNSSSHHQQHHHQSGSGGSHQHHHHHHSSLHSNQSRNQSPAESAHDLRMNSPDESPLHSPLEMSLEPAVNLAVGVSGMAYKPSRGYSSPRPEHLFQEDIAELVGAATSVSRNCPPNMSINNFKEPSPSIKIEPIAECRGD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00644010; iTF_00643142;
- 90% Identity
- iTF_00643142;
- 80% Identity
- -