Este001614.1
Basic Information
- Insect
- Empis stercorea
- Gene Symbol
- bab1
- Assembly
- GCA_949752835.1
- Location
- OX457085.1:21911701-21913147[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.3e-17 2.9e-14 53.3 0.0 1 43 28 71 28 73 0.95 2 2 0.21 2.6e+02 2.2 1.0 2 25 164 190 163 192 0.73
Sequence Information
- Coding Sequence
- ATGTGGCAAAAATGTTGGAatacaaatcaaaatttaatgcaTCATTTGCGATTTCGTGAACGGGGCCCATTAAAATCATGGCGACCAGAAACAATGGCTGAAGCAATTTTTAGTGTATTAAAAGAAGGACTTTCATTATCACAAGCTGCTAGAAAATATGACATTCCATATCCGACATTTGTTTTATATGCTAATCGAGTACATAATATGTTAGGACCATCAATTGATGGTGGTACAGATTTAAGACCGAAAGGACGTGGTAGACCACAAAGAATTTTACTTGGTATTTGGCCCGATGAACATATTAAAGGTGTTATTAAAACTGTTGTTTTTCGTGATGCAAAAGAACTGAAAGAAGAATCACAAATGCATTTACAATATGGACGACATTCTCCGGTTTTTCCTTTTCAAGAAAATCCATTAAATTATCCAGGTGGTCCGTGTCCTAATGGCATACCATCACAAGGAGGTAGTAGTGAATCAATGAGTCCTGAAGCAACAGCAGCAGCTGTTGCTGCTGTAGCACATGGAATACGACAACAAATGCAAATGGCTGCTGCAGCACAACATCATCCAGATTCTgcatcaaatttatataatttaccagCTCATTTACAAGCACATGTAGGTGGCGTTTCAATACCAAAGCAAAGTTCACCAGCATCAGCTGGTAGTGGTGGTGGTGGCGGTGATAAAGGTAGTGGAGGTGGCGGCAGCAGTGGTAGTCAAATGAATTCAAATTCACAGAGACATTCATCCCCACAAATGATTCCGAATCCGGCGTCTTTAGCAAGTTTAGCTGGTATTCCCGGATTACATATAATACCAGGTCTAAGTAGTTCTCAGTCAAATCAATCAAGCGGAGGTGGTGGTGGCGGTAATAGTGGAAACAGTGGCCATCATATGAGTACATATTCTTCCAACAGTTCAAGTAGTCATCATCATTCACATCATCATTCACAACATCAATCGGGTAGTGGCAATAGTAGTGGTGGTagtcatcatcatcaccatcatcatAGCAGTTTACATTCAAATTTATCACGTAATCAATCACCTTCAGAATCTGCTCATGATTTACGTATGAATAGTCCGGATGATAGTCCGCTTCATTCACCACTTGAAATGTCTTTAGAGCCAGCTGTTAATTTAGCTATTGGTGTTAGTGGTATGACATATAAAGCATCACGGGGTTATTCATCACCACGAGGTGAACATTTATTCCAAGAAGATATTGCCGATTTGGTTGGTGCAGCTACATCAGCAGCAGCACGTAATTGTCCACCAAATTTgagtattaataattttaaagagcCTTCGCCTAGCATTAAAATAGAACCGATTGCTGAATGTCGTGgtgattaa
- Protein Sequence
- MWQKCWNTNQNLMHHLRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSIDGGTDLRPKGRGRPQRILLGIWPDEHIKGVIKTVVFRDAKELKEESQMHLQYGRHSPVFPFQENPLNYPGGPCPNGIPSQGGSSESMSPEATAAAVAAVAHGIRQQMQMAAAAQHHPDSASNLYNLPAHLQAHVGGVSIPKQSSPASAGSGGGGGDKGSGGGGSSGSQMNSNSQRHSSPQMIPNPASLASLAGIPGLHIIPGLSSSQSNQSSGGGGGGNSGNSGHHMSTYSSNSSSSHHHSHHHSQHQSGSGNSSGGSHHHHHHHSSLHSNLSRNQSPSESAHDLRMNSPDDSPLHSPLEMSLEPAVNLAIGVSGMTYKASRGYSSPRGEHLFQEDIADLVGAATSAAARNCPPNLSINNFKEPSPSIKIEPIAECRGD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01297292;
- 90% Identity
- iTF_00643142;
- 80% Identity
- -