Eliv010894.1
Basic Information
- Insect
- Empis livida
- Gene Symbol
- bab1
- Assembly
- GCA_963932195.1
- Location
- OZ010647.1:40970421-40988080[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1.2e-17 1.9e-14 53.2 0.0 1 43 53 96 53 98 0.95 2 3 0.18 3e+02 1.4 1.7 2 25 189 215 188 216 0.71 3 3 1.8 3e+03 -1.8 0.0 22 30 220 228 219 229 0.90
Sequence Information
- Coding Sequence
- ATGGAAAACTCTCACGCATGGCTGGGAGCATCGACATCTTCGATAGCTGatAGTTATCAATATCAATTACAATCAATGTGGCAAAAATGTTGGAatacaaatcaaaatttaatgcatCATTTGCGATTTCGTGAAAGGGGACCATTAAAATCATGGCGACCTGAAACAATGGCTGAAGCAATTTTTAGTGTACTAAAAGAAGGTTTATCATTATCACAAGCCGCCCGAAAATATGACATTCCATATCCGACATTTGTTTTATATGCTAATCGTGTACATAATATGTTAGGACCATCAATAGATGGTGGTACAGATTTAAGACCTAAAGGACGTGGAAGACCACAAAGAATTTTACTTGGTATTTGGCCAGATGAACATATTAAAGGTGTTATTAAAACTGTTGTATTTCGTGATGCGAAAGAACTGAAAGAAGAAGGACAATTGCATTTACAATATGGACGGCATTCGCCCGTTTTTCCTTTTCAAGaaaatccattaaattatCCAGGAGGTCCGTGTCCTAATGGTATGCCATCGCAAGGAGGTAGTAGTGAATCAATGAGTCCTGAAGCAACAGCTGCAGCTGTTGCTGCTGTTGCACATGGAATACGACAACAAATGCAAATGGCTGCTGCAGCACAACATCATCCAGATTCAGCTGCTAATCTTTATAATTTACCAGCACATTTACAAGCACATGTCAGCGGAGTATCAATACCAAAGCAAAGTTCTCCAGCTTCAGCTGgtagtggtggtggtggtgatAGAAGTAGTGGTGGTGGCGGTGGTGGGAGTAGTGGTGGTCAAATGAATTCAAATTCACAGAGACATTCATCACCACAAATGCTTCCTAATCCAGCATCATTAGCGGGTTTAGCTGGTATTCCAGGTTTACATATTATACCAGGTCTTAGTAGTTCTCAGTCAAATCAATCCAGTGGAAGTGGTGGTGGCGGTGGTAGTGGAAATAGTGGTCATCATATGAGTACATTTTCTTCCAACAGTTCAAGTAGTCATCATCATTcgcatcatcatcatcaatctGGAGGTGGTAGCGGTGGTGGTGGtagtcatcatcatcatcatcatcatagcAGTTTACATTCAAATTTATCACGTAATCAATCACCGTCAGAGTCTGCCCATGATTTACGAATGAATAGTCCGGATGAAAGTCCGCTTCATTCACCACTTGAAATGTCTTTAGAACCAGCGGTTAATTTAGCTGTTGGCGTTAGTGGTATGGCATATAAACCATCACGTGGTTATTCATCACCACGAGCTGAACATTTATTCCAAGAAGATATTGCCGATTTGGTTGGTTCTGCTACATCAGTGTCACGTAATTGTCCACCAAATATgagtattaataattttaaagagcCTTCGCCTAGCATTAAACTTGAACCGATTGCTGAATGTCGGAGTGAATAA
- Protein Sequence
- MENSHAWLGASTSSIADSYQYQLQSMWQKCWNTNQNLMHHLRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSIDGGTDLRPKGRGRPQRILLGIWPDEHIKGVIKTVVFRDAKELKEEGQLHLQYGRHSPVFPFQENPLNYPGGPCPNGMPSQGGSSESMSPEATAAAVAAVAHGIRQQMQMAAAAQHHPDSAANLYNLPAHLQAHVSGVSIPKQSSPASAGSGGGGDRSSGGGGGGSSGGQMNSNSQRHSSPQMLPNPASLAGLAGIPGLHIIPGLSSSQSNQSSGSGGGGGSGNSGHHMSTFSSNSSSSHHHSHHHHQSGGGSGGGGSHHHHHHHSSLHSNLSRNQSPSESAHDLRMNSPDESPLHSPLEMSLEPAVNLAVGVSGMAYKPSRGYSSPRAEHLFQEDIADLVGSATSVSRNCPPNMSINNFKEPSPSIKLEPIAECRSE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01297292;
- 90% Identity
- iTF_00644010; iTF_01297292;
- 80% Identity
- -