Rbic062795.1
Basic Information
- Insect
- Rhamnusium bicolor
- Gene Symbol
- Rfx2
- Assembly
- GCA_029963845.1
- Location
- JANEYF010005254.1:422222-435797[+]
Transcription Factor Domain
- TF Family
- RFX
- Domain
- RFX domain
- PFAM
- PF02257
- TF Group
- Basic Domians group
- Description
- RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer [1]. It recognize X-boxes (DNA of the sequence 5'-GTNRCC(0-3N)RGYAAC-3', where N is any nucleotide, R is a purine and Y is a pyrimidine) using a highly conserved 76-residue DNA-binding domain (DBD) [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.3e-38 8.9e-34 118.0 0.0 3 78 41 116 39 117 0.97
Sequence Information
- Coding Sequence
- ATGTACAACGAAACGAATTATGTGGCAACTGCCACTGTGCATGCTACGCAATCTTCTGGTCAAGTGGTAGCTGGTGAAGATGTTGGATCCGCTCTTGGACATGCTACCAGAGTATCTCCTGCCACTGTTCAGTGGTTACTTGAAAATTATGAAACTGCCGAAGGAGTGTCTTTACCCCGTTCAACTCTATACGCACACTACTTAAGGCACTGTGCAGAAAACAAACTCGAACCTGTTAATGCTGCTTCTTTTGGAAAACTAATTAGATCTGTTTTTTTGGGACTGAGAACTCGGAGACTGGGAACgagGGGCAATTCCAAGTATCATTATTATGGTATACGCGTAAAACCAGGTTCCTCGCTCATGAACATGGAGGATCCAAGTGGCAGAGTCGTCCTTACCTCAACCAATTCCAGCGGTAAAGCCCAAGGGACTGTACGGCCTTTCAAACGTAACTCTGATCCTTCTGATACCTCTATTTCAAATAGTGGCTTATCCCAACACGTAACATATTTAGGTGATGGAAGCAGTGCAATACCTGCTTTTCCTGACATTCATTTTGCCGAACAACTACCTGATGATTGTGGATATGAGGACGTTGACACCTTGAAGTCTATTTATAGGGAGCACTTGGAGGCCTTCCTAGATGCCATATTGAGCTTGGAGTTTTCCACAGTGGAGTCACTTTGGAGGGAGTTTTGGCGATCACAGTACAACAATAACAGTGATGAGTGTGAGGAGGAGAAATACTTATCCAAATCAAAACTGTTTTCGTTGTGTAGCCTGGAACCTGTGCAGCAGTTTATGAGACAAGTGGATTTGATATTCTATCAGAATCTGATTCAAGTTTTGGTGCCTGATGTGCTTAAACCGATACCTGCCACTCTCACTCAGTCTATTAGGAACTTTGCAAAGAatttgGAAAGCTGGTTGACAAGTGCCATGGCCGGGGCTCCTGTCGCGATGTTACAAATAAAGCTGACAGCTGTGTCTGCTTTTAGTTCTAGTCTCAGACGTTACACGTCTTTAAATCACCTGGCCCAAGCTGCCCGTGCTGTTCTGCACAACAGCAATCAGATTGGGCAGATGTTAGCAGATCTGAACCGAGTAGATTTCCACAGTGTCCGCGAACAGGCGTCTTGGGTCTGCCAGTGTGACAATGAAATTGTTGCGAGGTTTGAAAATGATTTCAAGTTAACTCTGCAACAGCAAAATTCCTTGGAACAATGGGCATCCTGGttgaaaaatgttgttaaaagtGCTTTGAAACCATATGAGGGGAAACCAAGTTTCTCCAAGGCAGCCAGGCAGTTTTTGTTGAAGTGGAGCTTTTACAGTTCAATGGTTATTAGAGACTTAACACTTCGCTCTGCTGCCAGTTTTGGATCATTTCATTTGATTAGGTTGTTATATGACGAATATATGTTTTACTTGATTGAGCATCAGGTTGCAGAAGCGACTGGAGTTGTGCCGATTGCTGTAATTTTGGAAGGAATTGTGAGTAtagaactaataaaagtattaactacATATTAG
- Protein Sequence
- MYNETNYVATATVHATQSSGQVVAGEDVGSALGHATRVSPATVQWLLENYETAEGVSLPRSTLYAHYLRHCAENKLEPVNAASFGKLIRSVFLGLRTRRLGTRGNSKYHYYGIRVKPGSSLMNMEDPSGRVVLTSTNSSGKAQGTVRPFKRNSDPSDTSISNSGLSQHVTYLGDGSSAIPAFPDIHFAEQLPDDCGYEDVDTLKSIYREHLEAFLDAILSLEFSTVESLWREFWRSQYNNNSDECEEEKYLSKSKLFSLCSLEPVQQFMRQVDLIFYQNLIQVLVPDVLKPIPATLTQSIRNFAKNLESWLTSAMAGAPVAMLQIKLTAVSAFSSSLRRYTSLNHLAQAARAVLHNSNQIGQMLADLNRVDFHSVREQASWVCQCDNEIVARFENDFKLTLQQQNSLEQWASWLKNVVKSALKPYEGKPSFSKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVAEATGVVPIAVILEGIVSIELIKVLTTY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00260388; iTF_00639269; iTF_00646534; iTF_00885641; iTF_01239851; iTF_00195685; iTF_00025776; iTF_00165809; iTF_00436217; iTF_00375994; iTF_01306980;
- 90% Identity
- iTF_00260388; iTF_00639269; iTF_00885641; iTF_00025776; iTF_00165809; iTF_00436217;
- 80% Identity
- -