g65855.t1
Basic Information
- Insect
- Diabrotica virgifera
- Gene Symbol
- RFX3
- Assembly
- GCA_003013835.2
- Location
- ML016774.1:104747-133199[-]
Transcription Factor Domain
- TF Family
- RFX
- Domain
- RFX domain
- PFAM
- PF02257
- TF Group
- Basic Domians group
- Description
- RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer [1]. It recognize X-boxes (DNA of the sequence 5'-GTNRCC(0-3N)RGYAAC-3', where N is any nucleotide, R is a purine and Y is a pyrimidine) using a highly conserved 76-residue DNA-binding domain (DBD) [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.1e-29 1.3e-24 89.3 0.1 19 78 26 85 10 86 0.92 2 2 1.6 9.7e+04 -3.2 0.0 42 54 424 438 412 443 0.67
Sequence Information
- Coding Sequence
- ATGTCTGCCTGTTTCAAATCTGCTGCTTGTACCCTACTCTGGTGTCTTCTGTTTAAGATCCAGTTTTCTGCTCCGTGTGTAAGCTTTGGGCCATTATACGCTCACTACCTCAGACATTGTGCCGAAAACAAATTGGAACCTGTGAATGCTGCCTCTTTCGGAAAATTAATCAGGTCCGTATTTTTGGGACTGAGGACGCGACGATTAGGAACTAGgGGAAACTCAAAATACCATTACTACGGAATCAGAGTCAAACCTGGCTCTTCGTTAATGAACTTAGAAGACCAAAGCAGTCGCGTGGTACTGAGCTCTAATAATACAAACGGAAAAGCTCAAGGAACCGTTCGGCCTTTTAAACGCAGTTCAGATTCTTCAGACTCGATTAACTCTGGCTTATCTCAACATGTTGCGTATCTAGGTGATGGTAGTAGTGCAATTCCTGCATTTCCTGATATACAATTTCGTGAACCATTGCCAGAAGATTGCGGTTACGAAGACGTAGACACATTAAAATCAATCTATAGAGAACACTTGGAAGCATTTTTAGATGCCATTTTGAGTTTAGAATTCGCTACAGTTGAATCTTTGTGGAGAGAATTTTGGAGGTCTCAGTATAATAATAACAGCGATGAATGtgaagaagaaaaatatcttTCGAAGTCAAAGTTGTTTTCTCTATGCAGTTTGGAGCCTGTTCAGCATTTTATGAGACAAGTAGATTTGGTGTTTTACCAAAATCTTATTCAAGTTTTGGTGCCTGACGTTTTGAAACCGATACCTGCCACTTTGACTCAGAGTATACGTAACTTTGCTAAAAATCTAGAAAATTGGTTAACAACTGCAATGACTGGTGCTCCTCCAGCGATGCTCCAAATAAAGCTTACTGCAGTCTCAGCCTTCAGCTCAAGTTTGCGCCGCTACACTTCACTCAACCACCTCGCTCAAGCAGCTAGAGCTGTCTTGCACAACAGCAACCAAATAGGACAGATGTTAGCGGATCTGAACCGTGTTGATTTTCATAGCGTTAGAGAACAAGCATCATGGGTATGTCAATGTGACAACGATCTGGTAGCCCGATTCGAAAACGACTTTAAACTCACCTTACAACAGCAAAACTCTTTGGAACAGTGggcttcatggttgaagaacgtCGTCAAAAGTGCTTTGAAGCCTTATGAAGGAAAGCCAAGCTTCTCGAAGGCTGCGAGGCAGTTTTTGCTCAAGTGGAGCTTCTACAGTTCCATGGTTATCAGGGATTTGACGCTGCGATCTGCAGCTAGTTTTGGAAGTTTCCATTTGATAAGGTTGCTGTATGATGAGtatatgttttatttaattgaaCATCAAGTAGCTGAGGCCACAGGAGTTGTACCGATTGCTGTTATTCTCGAAGGAATCGTAAGTTGA
- Protein Sequence
- MSACFKSAACTLLWCLLFKIQFSAPCVSFGPLYAHYLRHCAENKLEPVNAASFGKLIRSVFLGLRTRRLGTRGNSKYHYYGIRVKPGSSLMNLEDQSSRVVLSSNNTNGKAQGTVRPFKRSSDSSDSINSGLSQHVAYLGDGSSAIPAFPDIQFREPLPEDCGYEDVDTLKSIYREHLEAFLDAILSLEFATVESLWREFWRSQYNNNSDECEEEKYLSKSKLFSLCSLEPVQHFMRQVDLVFYQNLIQVLVPDVLKPIPATLTQSIRNFAKNLENWLTTAMTGAPPAMLQIKLTAVSAFSSSLRRYTSLNHLAQAARAVLHNSNQIGQMLADLNRVDFHSVREQASWVCQCDNDLVARFENDFKLTLQQQNSLEQWASWLKNVVKSALKPYEGKPSFSKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVAEATGVVPIAVILEGIVS*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01295732;
- 90% Identity
- iTF_01295732;
- 80% Identity
- -