Rgig016525.1
Basic Information
- Insect
- Rhagophthalmus giganteus
- Gene Symbol
- lrrfip2
- Assembly
- GCA_036326145.1
- Location
- JARFJA010000055.1:653309-655568[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.3e-107 1e-102 344.3 30.7 1 300 103 396 103 396 0.93 2 2 0.031 9.8e+02 -0.4 6.4 121 170 395 444 394 471 0.67
Sequence Information
- Coding Sequence
- ATGGAGATGAGCGACACCGAACTAAATAATTCCATTTCGTCCGGAAGTTTAGATTCGCTCAccgatattttaaacaatttaaattccgacgACGAGTCCGGccttaacaataaaaatgacgGTGCGATAGTTGTAAAtggcaaaaaattaaagaacgCGAATtcgtgtaaaaattataaaattgttggtGCGAACGAAGATTATGACGTGGACCTCGATCAGAAATCTAGTAGGAAACACAGCGTTATATACGAGTATTCGGAGGCGAAAGTTATTAGACAATTTTTAGATCATTGCAATGACGACGCAGAGGCCCGTTTGCTGGCCCGGCGACAAGCTAGGGCAGAGGCCAGGGATATACGCATGAGAGAACTGGAACGGCAGCAGAAGGAACAAGAGGAAAATGCCGATAGACAGTACGACATGTTAGAGGCGACGACGCGAGCAGCAAGAACCTCGGGCACCGGTCGATATCTTTCGAGTCGGCGTAGCTCCGAAGATTCCCTCGAAGACGGCGGCAGCATCAGGGAGATACGGcACGAACTAAAAGAAATGGAGGAGAAATTTAGGAAGGCCATGATAGCTAATGCTCAATTAGATAACGACAAAGCTTCGCAAACGTATCAACTGGAGCTGCTTAAAGATAGGTTAGAGGAATTAGAAGAAGAACATTCTCAACTTCGCCGCGAGCACAGAGATAAATGTAGGGAATACGATCAGCTTAATAGATTGGCTGCACGTCTTAAAGACGATTTGGCTGTGACTAAAATGGAATTAGAAGAACGTGATGGTCTGATAGCCGAAAAAGGTTTGGTGATAGTGGTCGAGGATCTTATTCCTTACGAGGAGAATGGCGAAGACGTTAGTAGCGATAGCGTCGGTAGTCCGACCAAAAAGGCTCTTGTTAGCATCGAAAATGCCAAACTGTTGGAGAATGCCGGCGAAGGAAGTTTAGACGTGCGGTTGGGTAGATTTGCTGCAGAGAAAAAAGACCTTCAAGATCAAATTAGTCATCTAAGGTTAGAATTAGAAGAGGAGAAAAGTAAAAGGAGAAAAACCAGCAGCGTGACTCTTAACGGGCCTACTTCCGATTCCGATTATGACCCCGACGATATCCAAAgAGACATAGTGAGACAATTAGCAGATTATAAGTTTAGAGCTCAAAAGGCGGAACAGGACGTTGCCACTTTGCAGGCGACAGTGGCAAGATTGGAAAGTCAAGTCGTAAGGTACAAGTCGGCGGCCGAAATGTACGAAAAGTCCGAAGAAGCCTTAAAACAAGAGAAGAGGAAATTGCAAAGAGAGgcaAGAGAAGCACAAAATCGAGCAGAAGAATTAGAAACATCGAATACGCATTTGTTGAAGCGACTAGATAAGCTGAAAAACGCTAAATCCACATTACTTAAAGAACTTTGA
- Protein Sequence
- MEMSDTELNNSISSGSLDSLTDILNNLNSDDESGLNNKNDGAIVVNGKKLKNANSCKNYKIVGANEDYDVDLDQKSSRKHSVIYEYSEAKVIRQFLDHCNDDAEARLLARRQARAEARDIRMRELERQQKEQEENADRQYDMLEATTRAARTSGTGRYLSSRRSSEDSLEDGGSIREIRHELKEMEEKFRKAMIANAQLDNDKASQTYQLELLKDRLEELEEEHSQLRREHRDKCREYDQLNRLAARLKDDLAVTKMELEERDGLIAEKGLVIVVEDLIPYEENGEDVSSDSVGSPTKKALVSIENAKLLENAGEGSLDVRLGRFAAEKKDLQDQISHLRLELEEEKSKRRKTSSVTLNGPTSDSDYDPDDIQRDIVRQLADYKFRAQKAEQDVATLQATVARLESQVVRYKSAAEMYEKSEEALKQEKRKLQREAREAQNRAEELETSNTHLLKRLDKLKNAKSTLLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00151782;
- 90% Identity
- -
- 80% Identity
- -