Rlut002642.1
Basic Information
- Insect
- Rhagonycha lutea
- Gene Symbol
- nfxl1
- Assembly
- GCA_958510855.1
- Location
- OY294036.1:32290526-32295832[+]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 2.3 2.1e+04 -3.3 0.3 14 18 122 126 122 127 0.73 2 21 4 3.6e+04 -5.0 1.9 15 19 166 170 166 170 0.85 3 21 0.26 2.4e+03 -0.3 0.4 4 10 201 207 200 207 0.95 4 21 5.8e-06 0.053 14.5 18.4 1 19 215 232 215 232 0.99 5 21 7.7e-07 0.007 17.4 13.3 3 18 270 285 268 286 0.92 6 21 2.7 2.5e+04 -3.6 1.0 6 10 311 315 310 315 0.88 7 21 4.5e-07 0.0041 18.1 8.1 1 18 321 338 321 339 0.98 8 21 1 9.3e+03 -2.2 1.4 5 10 363 368 363 368 0.95 9 21 2.7e-05 0.25 12.4 11.5 1 18 374 391 374 392 0.99 10 21 0.73 6.6e+03 -1.8 0.3 1 5 401 405 401 405 0.95 11 21 0.16 1.4e+03 0.4 15.1 1 18 426 443 426 444 0.94 12 21 4.1e-10 3.7e-06 27.8 12.8 1 18 453 470 453 471 0.97 13 21 1.2 1.1e+04 -2.4 1.0 5 10 499 504 499 504 0.94 14 21 0.0004 3.7 8.7 6.1 10 19 520 529 517 529 0.90 15 21 0.014 1.2e+02 3.8 5.9 1 12 539 549 539 549 0.90 16 21 3 2.7e+04 -3.7 2.7 14 18 577 581 577 582 0.90 17 21 7.9e-05 0.72 10.9 6.6 1 11 618 628 618 629 0.97 18 21 3 2.8e+04 -3.7 1.7 5 10 645 650 645 650 0.91 19 21 2.2e-05 0.2 12.7 14.2 3 19 659 675 658 675 0.94 20 21 1.2e-05 0.11 13.5 9.5 1 15 718 731 718 733 0.97 21 21 3.8 3.5e+04 -4.1 1.2 6 10 768 772 767 772 0.86
Sequence Information
- Coding Sequence
- atgagtaCTTCTGCTAGAAATGCTCGAAATCCATGGTCTAAAAATgaacaacaaaataaaaaaccGCGGCAAAATCCAATTAACAGcacttcaaaatcaaaatcgGAGAAAAAGTTTCAAGAGGTGCAAGAAAAATTACAAGCAGCTGTTAAGAAGCATGTAAAAGAATACGATTCTTCATCCGAAGAAGAAGAGTTGGAATCGAATACCATATTAGaatCAATTTTAAAGACTTACCATCAAACTGGAGCATCTAATAATGGTTTACAGAGAACTCAAGAAATTATAAGTGATACCTTTTCATCTGGAACTACAACATGTTTAATATGCATATCATCGATTAAGAGAAACGAATCAGTATGGAATTGTGGAGAATGTTATTGTATGTTTCATTTATCATGTATTCAACGTTGGTCGAAGGATACTATAGTGCAACAAAAACAAGCATTGGAGGGTCCAATTGTGGTTTCGTACAAAAAGGAAATTGCATGGGGATGTCCAAAATGTAGGCAAGAATATGGTCCCAATGATATTCCAACGACTTGCACTTGTTTCTGTAAGAAAGCTGTTAATCCACAGTTTCAACCATTTTTGGTACCACATTCTTGTGGTGAGATTTGTGGGAAGAATTTGAAACCACATTGTGGTCATGGTTGTGTGTTACTATGTCATCCAGGTCCTTGTCCACCTTGCCCTCAAATGGTAACAGTTACATGTTACTGTGGTGTGAAACCTCCTCAACCGCAAAGATGTTGCAATAAGGAATGGTCATGTGGTTCATcgtgtaataaattattagcatGCAAGAAACACAAATGTTCACAACGTTGTCATGAAGGGGACTGTGAACCATGCGCAAAGAAGAGCATTCAAAAATGCATATGTGGTTCAAACAGTAAATTAAGAAATTGTGCAACCCCAATGTGGCAATGCGATAAGgTATGTAATAAACCTTTGGAATGCGGGTTTCATAAATGCTTGGAGGTGTGTCACATTGGAGGTTGTGATTCATGTGCTCTATCAAAACCTCGTACTTGCGCTTGTGGTAAATCCATATACAATTTACCCTGTACTGAAGAAACTCCAACTTGTGAAGATACATGTGGAAAAATGTTAGAATGTGGTGTTCACCCTTGTAACCAGAGGTGTCATAAAGATAATTGCGGCACATGTTTTCAAACTGTAACTAAAGTTTGTCGTTGTGGATTACATACCAAAGATGTTCAGTgtagaaaaatttacttatgTGACACTAAATGTAAGGAGATTAAAGACTGTAACAAGCATCCATGTAATCGAAAGtgcTGTGACAAAAATTGTTCACCATGCGAAAAACCATGTGGTCGTACTTTATCCTGTGGAAATCACAAATGTACCTCAATTTGTCATCGTGGCCCTTGTTATCCATGCAATTTAACAGAAAGTGTTAGTTGTTGTTGTGGAAAAACTTCCATTACAGTTCCATGTGgtagaaaacaaaaaactaaGCCTCCGAAATGTAATAAGTTGTGTTTTAATCCACCCAATTGTCATCATTTAAAACGTGAGGATCATCGTTGTCATTTCGGGGATTGTCCACCTTGCAAGCAAATATGTAATCAGAACAGGACAAATTGTTCTCACAAGTGTCCAGCTTCTTGCCATTCTGCAGTCCTTGTTAAAGTTGAATTTGAAAAACCATCCATGCCTTGGGAACAAGTAAAGCCTCAACTAGAATTAAAAGCACTACCATGTCCCAATTGCGTAGTCGATGTACCCATGACTTGTTTAgGCAAACATGAAACTTCTAATTTTCCTTGTTATATGGCAAGAGTTTCAAGTTGTGGTAGAACATGTAGGCGCTTAATGGATTGTGGTAACCATCAGTGCACCCAAATGTGTCATTTGGTAGAAAATGCCAAAAATGAACTACTGGCTGGAATTAATTGTGAAAAGTGTGAAAAATCATGCGAGAAACCTCGACCTGAAGGATGTCAACATATTTGTTTTAAACCATGTCATCCTGGTGCTTGTCCACCTTGTAAGCAAATGATTCGTTTGAAATGCCACTGTGGTCTTAATCAACCATACGTTTTATGCAGTACTTGGACTTCCATCGATAATAAAGAAGAATTACAAACTTGTGGGGACCGGTGCCCTAAAAATTATGAATGTGGTCATCGATGTCGTTCGAACTGCCATTCAGGTCCATGTGTTACTTCTGAACTAtgcaagaaaaaaattaaagtgacTTGCAACTGCAGACGTATTAAGAAGGATTTCACTTGCGAAATGGTAAAATCCAAACTTGCTATTATAGAATGTGACGAGACATGCTTGAAAAagcaagaagaagaaaagaaattgaaagacaaagaagaagaaataaggAAGAAAGAGGAAGAGTTGAAAAATAAGATAGAATTAGAGAAGTTTGAAAAGAAATTCCAAGGAAAAAAACGCTACAAGGAGAAACGTGTTCTTAATGAATCTGACAATCGttcttttatacaaaaaaattgggTGATGATTTTATCCCTTATGATGCTTGTTATTTCCATTAtgttttattgtttacttttataa
- Protein Sequence
- MSTSARNARNPWSKNEQQNKKPRQNPINSTSKSKSEKKFQEVQEKLQAAVKKHVKEYDSSSEEEELESNTILESILKTYHQTGASNNGLQRTQEIISDTFSSGTTTCLICISSIKRNESVWNCGECYCMFHLSCIQRWSKDTIVQQKQALEGPIVVSYKKEIAWGCPKCRQEYGPNDIPTTCTCFCKKAVNPQFQPFLVPHSCGEICGKNLKPHCGHGCVLLCHPGPCPPCPQMVTVTCYCGVKPPQPQRCCNKEWSCGSSCNKLLACKKHKCSQRCHEGDCEPCAKKSIQKCICGSNSKLRNCATPMWQCDKVCNKPLECGFHKCLEVCHIGGCDSCALSKPRTCACGKSIYNLPCTEETPTCEDTCGKMLECGVHPCNQRCHKDNCGTCFQTVTKVCRCGLHTKDVQCRKIYLCDTKCKEIKDCNKHPCNRKCCDKNCSPCEKPCGRTLSCGNHKCTSICHRGPCYPCNLTESVSCCCGKTSITVPCGRKQKTKPPKCNKLCFNPPNCHHLKREDHRCHFGDCPPCKQICNQNRTNCSHKCPASCHSAVLVKVEFEKPSMPWEQVKPQLELKALPCPNCVVDVPMTCLGKHETSNFPCYMARVSSCGRTCRRLMDCGNHQCTQMCHLVENAKNELLAGINCEKCEKSCEKPRPEGCQHICFKPCHPGACPPCKQMIRLKCHCGLNQPYVLCSTWTSIDNKEELQTCGDRCPKNYECGHRCRSNCHSGPCVTSELCKKKIKVTCNCRRIKKDFTCEMVKSKLAIIECDETCLKKQEEEKKLKDKEEEIRKKEEELKNKIELEKFEKKFQGKKRYKEKRVLNESDNRSFIQKNWVMILSLMMLVISIMFYCLLL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00270728; iTF_00272137; iTF_00273294; iTF_00269428; iTF_00928344; iTF_01293247;
- 90% Identity
- iTF_00269428;
- 80% Identity
- -