Rlut013467.1
Basic Information
- Insect
- Rhagonycha lutea
- Gene Symbol
- -
- Assembly
- GCA_958510855.1
- Location
- OY294038.1:12550248-12551677[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.11 1.9e+02 3.3 0.2 21 48 117 144 109 149 0.81 2 11 0.36 6.3e+02 1.6 0.2 21 40 145 164 141 171 0.73 3 11 3.8e-05 0.066 14.3 0.1 14 52 165 204 160 206 0.82 4 11 2.5 4.3e+03 -1.1 0.0 23 46 203 226 201 232 0.79 5 11 0.29 5.1e+02 1.9 0.0 21 52 229 260 224 262 0.83 6 11 2.7 4.7e+03 -1.2 0.0 21 45 257 281 253 286 0.79 7 11 0.0091 16 6.7 0.0 26 52 290 316 283 318 0.86 8 11 0.082 1.4e+02 3.7 0.0 22 52 314 344 311 345 0.85 9 11 0.25 4.2e+02 2.1 0.1 23 44 343 364 337 368 0.82 10 11 0.038 65 4.7 0.0 21 52 369 400 365 402 0.88 11 11 0.15 2.6e+02 2.8 0.0 21 45 425 449 421 453 0.90
Sequence Information
- Coding Sequence
- ATGGAACCtgattataaaaatgttaagaTCGAAGTTTTCGTTAAGGAGGAACCCCTGGAAAATGAAGATTACTTTGATGATGATTACAAAGACAcagATGATTATAACGTCTACATACAAGAAACAAAGACGGAAATGGTTCATTGTGAACCGGAACACCACCTAATTCACATGAAAGAAGAACCTGATGATAATGTCGAAACTGATTCATCTAACCAATTGTTCTGGAACTCCGTGGAATCCTTCAAACAGGAAATTACCAAAAAACTTCATTTCAACAGCACTGTGGaaggaaatttatttaatcGTGAAGTAACTAAGTTAAAAAGTGGTGTAAAAGGTCAGACTGTTGAAAGACCGTTCGTTTGTGAAGTGTGCCATGCAAAATTTCCCAAGAGGAGCAGTTTACAATATCACATTCGAATTCACACCGGGGAAAAGCCTTTTACCTGTACTGTGTGCGAAAAGAAATTCACCCGTAAAGGCGATTTGAAGTCGCACTCGAAAGTTCATTCAGGAGAAAAAccttttatttgtaatttatgtaACGCTAAGTTTTCCCATCGCAGTAACCTGCAAAGACACTTAAAACTTCACACGGGTTATAAGCCGTTTGCTTGCAATGTGTGTAATAAGAGTTTCGCCCAAAAGACTTACTTGCAATATCACGAAAAAATGCATACAGGTGAAAAGCCATTCGATTGCAATTTATGTCAACGAAAGTTTACTCGAGAAAGTTACTTACGGTTGCACTTAAAAACccacacaggtgagaaaccaTTTGTTTGTGATTTATGCGATAAGAAGTTTCCCCACAAGGCCAGCTTACAGTCCCACTTGAAAATTCATCTTGAcgaaaacgaatttttttgCAGCGTCTGCAATTTGACCTTTAATCGAAAAGATAACTTACGTAGTCATTTAAAATTGCATGCCGATGAGAAGCCGTTTGTTTGTGATGTTTGCGAGAAgagattttctgtaaaaaataacTTCGATAGGCACTTAAGGGTCCACACCGGTATAAAACCGTTTACGTGTGATGTGTGCAGTGCAACGTTCGGTAGGAAAAGTACTTTACAGGGTCACATTAAAACTCACACCAACGAGAGACCTTTCGTTTGTGATTTATGCGATTCGAAATTTACACAAAACAGTCATTTGCAATATCATTTGAAAATCCATagcggcgagaaaccgtttaatTGTGGTTTCTGCCCCAAAACCTTTATTCGGAAAGGGGATTTAGATTGTCACTATCGAATTCATAcgggcgaaaaaccgtttgcttgtagtaaatgtgataaaaaatttattcagaAAAGCAACCTACAATATCACTTAAAAACTCACATTAATGAGAAGTAA
- Protein Sequence
- MEPDYKNVKIEVFVKEEPLENEDYFDDDYKDTDDYNVYIQETKTEMVHCEPEHHLIHMKEEPDDNVETDSSNQLFWNSVESFKQEITKKLHFNSTVEGNLFNREVTKLKSGVKGQTVERPFVCEVCHAKFPKRSSLQYHIRIHTGEKPFTCTVCEKKFTRKGDLKSHSKVHSGEKPFICNLCNAKFSHRSNLQRHLKLHTGYKPFACNVCNKSFAQKTYLQYHEKMHTGEKPFDCNLCQRKFTRESYLRLHLKTHTGEKPFVCDLCDKKFPHKASLQSHLKIHLDENEFFCSVCNLTFNRKDNLRSHLKLHADEKPFVCDVCEKRFSVKNNFDRHLRVHTGIKPFTCDVCSATFGRKSTLQGHIKTHTNERPFVCDLCDSKFTQNSHLQYHLKIHSGEKPFNCGFCPKTFIRKGDLDCHYRIHTGEKPFACSKCDKKFIQKSNLQYHLKTHINEK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00268823;
- 90% Identity
- iTF_01294092;
- 80% Identity
- iTF_01294092;