Rlut013467.1
Basic Information
- Insect
- Rhagonycha lutea
- Gene Symbol
- -
- Assembly
- GCA_958510855.1
- Location
- OY294038.1:12550248-12551677[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 1.8e-05 0.0012 20.1 1.2 1 23 121 143 121 143 0.98 2 12 4.3e-06 0.00029 22.1 2.0 1 23 149 171 149 171 0.98 3 12 5.3e-06 0.00035 21.8 3.2 1 23 177 199 177 199 0.97 4 12 9.9e-06 0.00066 21.0 1.4 1 23 205 227 205 227 0.97 5 12 1e-05 0.00069 20.9 2.7 1 23 233 255 233 255 0.97 6 12 2.1e-06 0.00014 23.1 1.3 1 23 261 283 261 283 0.98 7 12 6.6e-06 0.00044 21.5 2.2 1 23 289 311 289 311 0.97 8 12 7.5e-06 0.0005 21.3 0.9 1 23 317 339 317 339 0.98 9 12 1.4e-05 0.00092 20.5 0.5 1 23 345 367 345 367 0.99 10 12 2.6e-05 0.0017 19.6 2.6 1 23 373 395 373 395 0.98 11 12 0.0036 0.24 12.9 2.1 1 23 401 423 401 423 0.96 12 12 4e-07 2.7e-05 25.3 2.5 1 23 429 451 429 451 0.97
Sequence Information
- Coding Sequence
- ATGGAACCtgattataaaaatgttaagaTCGAAGTTTTCGTTAAGGAGGAACCCCTGGAAAATGAAGATTACTTTGATGATGATTACAAAGACAcagATGATTATAACGTCTACATACAAGAAACAAAGACGGAAATGGTTCATTGTGAACCGGAACACCACCTAATTCACATGAAAGAAGAACCTGATGATAATGTCGAAACTGATTCATCTAACCAATTGTTCTGGAACTCCGTGGAATCCTTCAAACAGGAAATTACCAAAAAACTTCATTTCAACAGCACTGTGGaaggaaatttatttaatcGTGAAGTAACTAAGTTAAAAAGTGGTGTAAAAGGTCAGACTGTTGAAAGACCGTTCGTTTGTGAAGTGTGCCATGCAAAATTTCCCAAGAGGAGCAGTTTACAATATCACATTCGAATTCACACCGGGGAAAAGCCTTTTACCTGTACTGTGTGCGAAAAGAAATTCACCCGTAAAGGCGATTTGAAGTCGCACTCGAAAGTTCATTCAGGAGAAAAAccttttatttgtaatttatgtaACGCTAAGTTTTCCCATCGCAGTAACCTGCAAAGACACTTAAAACTTCACACGGGTTATAAGCCGTTTGCTTGCAATGTGTGTAATAAGAGTTTCGCCCAAAAGACTTACTTGCAATATCACGAAAAAATGCATACAGGTGAAAAGCCATTCGATTGCAATTTATGTCAACGAAAGTTTACTCGAGAAAGTTACTTACGGTTGCACTTAAAAACccacacaggtgagaaaccaTTTGTTTGTGATTTATGCGATAAGAAGTTTCCCCACAAGGCCAGCTTACAGTCCCACTTGAAAATTCATCTTGAcgaaaacgaatttttttgCAGCGTCTGCAATTTGACCTTTAATCGAAAAGATAACTTACGTAGTCATTTAAAATTGCATGCCGATGAGAAGCCGTTTGTTTGTGATGTTTGCGAGAAgagattttctgtaaaaaataacTTCGATAGGCACTTAAGGGTCCACACCGGTATAAAACCGTTTACGTGTGATGTGTGCAGTGCAACGTTCGGTAGGAAAAGTACTTTACAGGGTCACATTAAAACTCACACCAACGAGAGACCTTTCGTTTGTGATTTATGCGATTCGAAATTTACACAAAACAGTCATTTGCAATATCATTTGAAAATCCATagcggcgagaaaccgtttaatTGTGGTTTCTGCCCCAAAACCTTTATTCGGAAAGGGGATTTAGATTGTCACTATCGAATTCATAcgggcgaaaaaccgtttgcttgtagtaaatgtgataaaaaatttattcagaAAAGCAACCTACAATATCACTTAAAAACTCACATTAATGAGAAGTAA
- Protein Sequence
- MEPDYKNVKIEVFVKEEPLENEDYFDDDYKDTDDYNVYIQETKTEMVHCEPEHHLIHMKEEPDDNVETDSSNQLFWNSVESFKQEITKKLHFNSTVEGNLFNREVTKLKSGVKGQTVERPFVCEVCHAKFPKRSSLQYHIRIHTGEKPFTCTVCEKKFTRKGDLKSHSKVHSGEKPFICNLCNAKFSHRSNLQRHLKLHTGYKPFACNVCNKSFAQKTYLQYHEKMHTGEKPFDCNLCQRKFTRESYLRLHLKTHTGEKPFVCDLCDKKFPHKASLQSHLKIHLDENEFFCSVCNLTFNRKDNLRSHLKLHADEKPFVCDVCEKRFSVKNNFDRHLRVHTGIKPFTCDVCSATFGRKSTLQGHIKTHTNERPFVCDLCDSKFTQNSHLQYHLKIHSGEKPFNCGFCPKTFIRKGDLDCHYRIHTGEKPFACSKCDKKFIQKSNLQYHLKTHINEK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00268823;
- 90% Identity
- iTF_01294630; iTF_01292089; iTF_01293225;
- 80% Identity
- iTF_01294630;