Rlut027048.1
Basic Information
- Insect
- Rhagonycha lutea
- Gene Symbol
- -
- Assembly
- GCA_958510855.1
- Location
- OY294040.1:42778654-42779960[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 6 0.31 5.3e+02 1.8 0.1 17 45 206 237 201 238 0.76 2 6 0.005 8.7 7.5 0.0 21 50 236 265 230 268 0.87 3 6 0.019 33 5.7 0.1 22 48 265 290 260 298 0.83 4 6 1.4 2.4e+03 -0.3 0.2 16 43 289 316 286 320 0.75 5 6 0.24 4.1e+02 2.2 0.1 18 43 318 344 307 348 0.73 6 6 1.5e-05 0.025 15.7 0.2 21 49 350 378 342 381 0.87
Sequence Information
- Coding Sequence
- ATGCATGCCGAGTGTCGTATGTGCCTCGGGATTTCCAATAACGTATTGGACATATTTTACGACCGCTTAGGCAACAAAATCGCCACAATTTCGTCGCTTGAGATTTCACCAGGTGACGGTTTTCCTACTAAAATATGCGAGGAGTGCGTGAGGAACGTACATCTACTTCACAATTTCCGCACCCAGATAATTAAAAGTAAAGAATCTCTGGAAGAAAATGCTGATTTGTTGGGAAGCGAATGCCGTACGTGTTTAAAAATTGTCACAGACAAAAAATACCTCGATGTATTGTCCGACGGTTTACCCCACAAAATCGAAGCGATTTCGTCGGTTGAGgtCTCAGCCGACgaccaattttcaaaaagtatttgTGCTAAATGCGCGAGAAAACTCGAATCGCTGTACCGGTTTCGTAATACGATCATAAGTAGTTGGAATATTTTAGTGGAACGTCGTGTTAAGATCGAAATAAAAGACGAAATTCTGGAGGAACCTCCCGCCGTAATTAATAAACCGATTAGAAAGCCAACGGTAATTGTAAAACGTAGGATTCATTTGTGCAAATGTCTGAAGTGTGACTTTTTAACGCCTGACTATAGGGCTTGGAAAATGCACATTCGTAGGCATGACGAACAGAACAGTCTGTGTGAATTCTGCGGAAAAGTAGTTAGTAACCCTCAATTTTCAAGTCACCTGGCAAGGCATACAGAATCGTTTGCAACGTGTAATATCTGCGGTAAaacgttgaaaaataaaatgaatcTTTCGATTCATATACTTTATTCGCATACGCAGAAGGAAGTTGAATGTCCTGAATGCGGAATTGTATTAAAGAGTAAACGAGGCCTCAACGCCCATATGTTGAGGCACCGCAGAGCAAACGATAAGCCCAAGAAGTGTTCGATGTGCGATGTAGGATTCGATAATTTGTCTGGTTTAAAGAAGCATATGCGGAGTCACACGGGTGAACGACCCTATATTTGTAAGATATGCAGTAAAGGCTTTTCTAGCACAAATGCTCTAAAAACTCATGTAAGGCAACACACACAGGAAACACCGTATACGTGTGATTATTGTGATGCCGCCTTTAAACAAGCTGTTTTGGTCAGACGACACTTGAAATCAAAACATCCCGAGAAAGTTGTACAGAAAAGTAGctcttaa
- Protein Sequence
- MHAECRMCLGISNNVLDIFYDRLGNKIATISSLEISPGDGFPTKICEECVRNVHLLHNFRTQIIKSKESLEENADLLGSECRTCLKIVTDKKYLDVLSDGLPHKIEAISSVEVSADDQFSKSICAKCARKLESLYRFRNTIISSWNILVERRVKIEIKDEILEEPPAVINKPIRKPTVIVKRRIHLCKCLKCDFLTPDYRAWKMHIRRHDEQNSLCEFCGKVVSNPQFSSHLARHTESFATCNICGKTLKNKMNLSIHILYSHTQKEVECPECGIVLKSKRGLNAHMLRHRRANDKPKKCSMCDVGFDNLSGLKKHMRSHTGERPYICKICSKGFSSTNALKTHVRQHTQETPYTCDYCDAAFKQAVLVRRHLKSKHPEKVVQKSSS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01292873; iTF_01294383; iTF_01293205;
- 90% Identity
- iTF_01294383;
- 80% Identity
- iTF_01294383;