Rful003577.1
Basic Information
- Insect
- Rhagonycha fulva
- Gene Symbol
- -
- Assembly
- GCA_905340355.1
- Location
- HG996558.1:1988682-1990202[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 0.00081 0.36 11.8 0.0 21 51 236 266 230 268 0.89 2 5 0.1 47 5.1 0.2 25 48 268 290 263 292 0.87 3 5 0.46 2.1e+02 3.0 0.3 16 43 289 316 288 320 0.72 4 5 0.86 3.9e+02 2.1 0.1 18 43 318 344 311 349 0.72 5 5 0.00031 0.14 13.1 0.3 21 49 350 378 342 381 0.87
Sequence Information
- Coding Sequence
- ATGCATGCCGAGTGTCGTATATGCCTCGGGATTTCCAATAACGTTTTGGACATATTTTTCGACCGCTTGAACAACAAAATCGCCACAATTTCTTCGCTTGAAATTTCACAAAATGACGGTTTTTCTACTAAAATATGCGAGGAGTGCGTGAGAAACGTACATCTACTTCACAATTTCCGCACCCAGATAATAAAAAGTAGGGAGACTTGGGAAGAAAATGCTGATTTGTTGGGAACCGAATGCCGTACGTGCTTAAAAATTGTCGAAGACAAAAAATACCTCGATGTATTGTCCGACGGTTTACCCCACAAAATCGAAACGATTTCGTCGGTTGAGGTCTCACCCGACGATCGATTTTCAAAAAATATTTGTGCTAAATGCGCGAGAAAGGTCGAATCTTTGTATCGGTTTCGTAATACGATCATAAGTAGTTGGAATATTTTAGTGGAACGTCGTGTTAAGATTGAAATAAAAGAAGAAATTTTGGAGGAACCTCCCCCGGTAATCAACAAACCGATTAGAAAGCCTACGATGATTGTTAAACGTAGGATTCACTTGTGCAAATGTTTGAAGTGTGACTTTTTAACTCCGGACTATAGGGCTTGGAAAATGCACATTCGTAAGCATGAAGACCACACCAGTCTCTGTGAATTCTGTGGGAAAGTAATTAATAACTATCAATTTACAAGTCACATGGCACGGCATACGGAATCGTCGGCAACGTGTAATATATGTGGTAAAATTTTGAAAAATAAAATGAATCTTTCGATTCATTTACTATATACACATACGCAGAAGGAAGTTAAATGTCCACAATGCGGAATTGTATTAAAGAGTAAACGAGGCCTCAACGCCCATATGCTGAGGCACCGCAGAGGAAACGAAAAACCTAAGAAGTGTTCGATTTGCGAATTACGATTTGAGAATTTGTCGGGTTTAAAAAAGCATATGCGTAGTCACACGGGCGAACGACCGTATATTTGTAAGATATGCAGTAAAGGGTTTTCTAGCACAAATGCCCTGAAAACTCATGTAAGGCAACATACACAGGAAAAACCGTATAAATGCAATTATTGTGATGCTGCGTTTAAACAAGCAGTTTTGGTTAGACGTCACTTGAAATCAAAACATCCGGAGAAAGTTGTACAGAAAAGTAGCTCTTAA
- Protein Sequence
- MHAECRICLGISNNVLDIFFDRLNNKIATISSLEISQNDGFSTKICEECVRNVHLLHNFRTQIIKSRETWEENADLLGTECRTCLKIVEDKKYLDVLSDGLPHKIETISSVEVSPDDRFSKNICAKCARKVESLYRFRNTIISSWNILVERRVKIEIKEEILEEPPPVINKPIRKPTMIVKRRIHLCKCLKCDFLTPDYRAWKMHIRKHEDHTSLCEFCGKVINNYQFTSHMARHTESSATCNICGKILKNKMNLSIHLLYTHTQKEVKCPQCGIVLKSKRGLNAHMLRHRRGNEKPKKCSICELRFENLSGLKKHMRSHTGERPYICKICSKGFSSTNALKTHVRQHTQEKPYKCNYCDAAFKQAVLVRRHLKSKHPEKVVQKSSS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01294627;
- 90% Identity
- iTF_01292873;
- 80% Identity
- iTF_01292873;