Rlut013651.1
Basic Information
- Insect
- Rhagonycha lutea
- Gene Symbol
- -
- Assembly
- GCA_958510855.1
- Location
- OY294038.1:14239977-14252790[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 0.57 9.8e+02 1.0 0.0 21 46 151 176 144 180 0.89 2 7 4.6 8e+03 -1.9 0.0 22 52 208 238 205 239 0.72 3 7 0.1 1.8e+02 3.3 0.1 19 45 300 327 296 336 0.84 4 7 1.4 2.5e+03 -0.3 0.0 22 46 332 356 329 359 0.88 5 7 0.16 2.7e+02 2.8 0.4 26 47 392 413 385 418 0.77 6 7 9e-06 0.015 16.3 0.3 21 46 415 440 412 445 0.91 7 7 7.7e-05 0.13 13.4 0.0 21 46 477 502 472 505 0.86
Sequence Information
- Coding Sequence
- ATGGAAAATCAAATTGAAAGTGTTACTATAATAGAAAGGGAGATAAAGGAAGAACCTATAtttaatgaagaagaagaatcctTGGAATTAGAATCTTCGGAGTCCATGATCGAAAAAGATTATAATTTCGAAACATCGGATGTTACCATTGATCGTCCCACTGATGAAATATCAGGCAAGATGCTTTGTTTATTCAATAATAGTTTCCaagagGAAAAAAATCCCAATCCAGACCATGTAGATTATTTTTTGGATGTTCGTCCATACTTAAATTCTGGCACCCAAACAAGTCAGTTCGGTTGTCATATCTGTGGCAGTCAATTTACACTTAAGAAAGTTTTACATCAGcacttaaaaattcatacaggAGAAAAACAATTTGCATGTGGAAGTTGTGACTACAAAACAGTTAAGAAAGGTAACTTGCAACGCCACGAGAGGATTCACACAGGGGAACGGCCTTTTGGATGCACAACTTGTGCATCTACATTTCAAGACGAGAGTGCATTACATAAGCATCTAAAAATTCACGGTCATAGAGATTGTTTCATGTGTACAATTTGCCAGAAAACATTTTATAGTAAGGGTGCACTAAAATTACACGAAAAGATTCATACAGGCGATAAACCATTTGCGTGTCAATTTTGTGACTATAGGGCTCTACGATCGGGTCACTTGATAAATCACTTAAAAGTTCACGCAGAAACGAAACCGTTTTTAAGTGAAAAAAGTACCAGTAAGACAATCGGACAGCAACGTTCCATATTAAACCACTCGGAAAGAAATCTAGAACTGTGTGAGTGCGAAACTTGCGGATACAAAACTGTTCACAAAGaggAAGAGGAGATCAAATCAGACCCCTTAGATTACTTTTTTGACGTTCAGTCGTATATAAATTCTCAAGAAGAACAAAAACCATTTGCATGTGGACTTTGCGAGTACCGAACGACGAAGAAAGGAAATCTGCAACGACACGAAAAGATTCACACAGGAGAAAGACCATTTGCATGTATACTATGTGATtctaaatttaaagaaaacagTGCGTTAcagaaacattttaaaatacacaCCGGTAAGGATTCATTTAAGTGCGAGGTTTGTAGCAATAATTTTTCTACCAAGGGTTCGTTAAAACTACATCTAAAAATTCATTCCGGGGAGAGGTTATTCAAGTGTGAATTTTGCGACTACAGAGCCATAAGGCAAAGTCACTTACGGAGTCATTTATTGGTTCACACAAATGAAAAACCCTTTTCCTGTGAAATCTGTCACTATGCGACCAGAAGTTCGACAAACTTACAAAGACATTTAAAGATTCATGtagataaaactttaatttcaatTGAAAAACCATATCAGTGTGAAACTTGCGATTACAAAACTGCcgataaaagttattttttgcaACATTCCAAAATTCACACTGGAGAGAAACCGTTTTCGTGTTATATTTGTGACTATGCGACTCTAAGGAGCAGAGATTTAAAAAGACACTTAAAAATTCACTCGAAAGACGAACAATATGAATGTGCAAGTTGTGGTTATAAAACGATAGCAATTCAAGAACCAACTTCTAATGACTATCTTTCAACTGATCACATCTCAAAGTTTAACGAAATCCTGGTGGCTAATACAGAGTTCAGACCACAAGAAGCTTTATTGATGTGGCATATGTACAATGATATAGTTTCAGTGAGTACACGGCATATTCAAATTCTGCCTGCGACAGCAACTGACAATATCACTCACTGGATATGCACATATTACGATGGTTCTGTAATACATATATATGACAGCGCCAATAATTATAAGGTTAATAATCTTACTTCTGATCAGCTACGGTTTCTTGATCGGTTATTTCCAAATAAACCTCCCATTATATACGAAGATGTTCAACaacaaaccaatggcgttgaTTGCGGTGTGTTTGCGATAGCTTTCGCTGTTGCTATAGCTAACGGCATGAATCCATCGCAACAGATATTCAATATTCCGGTGATGCGGAAccatttaaaagatatttttaatcagaatttacttttaaggttttctgttaatattacaaattgcgaGGTTCCTTCAATTATGGCAAGAGATAGAACAAACCCAAACAAAAGAAAACGATCAAACAGTATGTTTTTAGGCATAGAAAGTGGCACAAAGAGAAAAAGGCAAGAGAAGAATGCGGAGGTTAACGCAACAGAAACTAAACAACAAAGAAATGCAAAGTTAGAATGTGAACGAGaaagaatgaaaacaatgagagcattggaaacagaagaaaaaagaaatgcgaggttagaaaattgttttctaaaatatatcgagCTTGTGAACGAAAACACCGATCGTGATCAGGAGGAGAACATCGGTTCTGCAACTAACAACGGCGATGATGTTTCTGCGGTTGGCAATATAAGACTGTGGATAGAGTTCCCCAACACCGTGATCGGTCGGAAGAGACGCGTAAAAGCCAGACCTCATGTGATGTGCAAGTCAACTGTAATTAGTCGAGACTGGACGCATATTAATACTTGCATGGCCAACATATCTCTTGATGTTGAAATCAAATGCAAACGAAGGCAGTTTCCGCTAGTCCCCGCTTGCGCGTTGACCATACACAAATCGCAAGGCGGGACGGGACGTTCGACGAAGTTGTCTTTCAGTATATGA
- Protein Sequence
- MENQIESVTIIEREIKEEPIFNEEEESLELESSESMIEKDYNFETSDVTIDRPTDEISGKMLCLFNNSFQEEKNPNPDHVDYFLDVRPYLNSGTQTSQFGCHICGSQFTLKKVLHQHLKIHTGEKQFACGSCDYKTVKKGNLQRHERIHTGERPFGCTTCASTFQDESALHKHLKIHGHRDCFMCTICQKTFYSKGALKLHEKIHTGDKPFACQFCDYRALRSGHLINHLKVHAETKPFLSEKSTSKTIGQQRSILNHSERNLELCECETCGYKTVHKEEEEIKSDPLDYFFDVQSYINSQEEQKPFACGLCEYRTTKKGNLQRHEKIHTGERPFACILCDSKFKENSALQKHFKIHTGKDSFKCEVCSNNFSTKGSLKLHLKIHSGERLFKCEFCDYRAIRQSHLRSHLLVHTNEKPFSCEICHYATRSSTNLQRHLKIHVDKTLISIEKPYQCETCDYKTADKSYFLQHSKIHTGEKPFSCYICDYATLRSRDLKRHLKIHSKDEQYECASCGYKTIAIQEPTSNDYLSTDHISKFNEILVANTEFRPQEALLMWHMYNDIVSVSTRHIQILPATATDNITHWICTYYDGSVIHIYDSANNYKVNNLTSDQLRFLDRLFPNKPPIIYEDVQQQTNGVDCGVFAIAFAVAIANGMNPSQQIFNIPVMRNHLKDIFNQNLLLRFSVNITNCEVPSIMARDRTNPNKRKRSNSMFLGIESGTKRKRQEKNAEVNATETKQQRNAKLECERERMKTMRALETEEKRNARLENCFLKYIELVNENTDRDQEENIGSATNNGDDVSAVGNIRLWIEFPNTVIGRKRRVKARPHVMCKSTVISRDWTHINTCMANISLDVEIKCKRRQFPLVPACALTIHKSQGGTGRSTKLSFSI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01294333;
- 90% Identity
- iTF_01294333;
- 80% Identity
- iTF_01294333;