Rlut018706.1
Basic Information
- Insect
- Rhagonycha lutea
- Gene Symbol
- -
- Assembly
- GCA_958510855.1
- Location
- OY294038.1:65600863-65602992[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.017 30 5.8 0.0 21 46 26 51 23 57 0.88 2 21 3 5.1e+03 -1.3 0.0 22 45 84 107 81 115 0.67 3 21 0.65 1.1e+03 0.8 0.1 21 44 111 134 103 142 0.80 4 21 5.6 9.6e+03 -2.2 0.2 21 30 139 148 120 151 0.75 5 21 0.018 31 5.8 0.0 21 45 167 191 163 199 0.88 6 21 2 3.5e+03 -0.8 0.1 21 44 195 218 191 226 0.77 7 21 0.11 1.9e+02 3.3 0.0 23 47 225 249 218 256 0.85 8 21 0.00014 0.24 12.6 0.0 21 44 280 303 273 306 0.92 9 21 7.8e-05 0.13 13.3 0.1 20 45 307 332 303 339 0.87 10 21 4.9 8.5e+03 -2.0 0.1 18 31 333 346 332 362 0.73 11 21 0.28 4.8e+02 2.0 0.1 21 44 364 387 355 392 0.84 12 21 0.0093 16 6.7 0.1 21 44 392 415 388 423 0.86 13 21 0.026 46 5.2 0.0 22 46 421 445 414 451 0.86 14 21 0.52 8.9e+02 1.1 0.0 22 44 449 471 445 477 0.86 15 21 0.18 3.2e+02 2.5 0.4 24 44 479 499 473 504 0.83 16 21 0.59 1e+03 0.9 0.1 21 45 532 556 528 563 0.74 17 21 1.6 2.7e+03 -0.4 0.1 21 43 560 582 556 593 0.64 18 21 6 1e+04 -2.3 0.0 21 32 588 599 583 619 0.70 19 21 0.96 1.7e+03 0.2 0.0 11 33 605 628 600 647 0.70 20 21 1.9 3.3e+03 -0.7 0.2 21 35 644 659 636 670 0.75 21 21 0.3 5.2e+02 1.8 0.3 21 47 672 696 666 704 0.68
Sequence Information
- Coding Sequence
- ATGAAATTGAAGGTGGAAGATCTGCATCATTCAATTGATATTAAGGATGATGATACTGAAGTCAAATTACTGACTAGCAAGAATCCATTGGTATGTGAAATTTGCGACCTCAAATTCTCAtttaagggaaatttaaaacggCATTTACGAATCCATACCGAAAAGCGGCCCTATTATGAGTGTGCAACTTGTGGCCTAAATTTTCTAACTAGATCAAAACTGATAATTCATTTCAGAATtcatactggcgagaaaccgtttaagtgtgaagtttgtgactataaatgcacTCGAAAAGATGTGTTGAAAggtcatttaagaactcatacgaGAGAAAAACCGTTTAGTTGTAATGTTTGCGAGGCCAAATATGCGCGGAAGGATAGCCTAACAGTTCACTTAAGAACGCACACCGGCGAGGAGCcatttaagtgtgaaatttgtgactttaaaagtGCATATAAGGGAAAGTTAGAAGTTCATTTAAGAATCCATACCGGTGAGAATCCTTTTATGTGTCCACTTTGTGACTATAGATCtgattataaaagaaatttgacaaatCATTTAAAATCGCATACAAACGAAAGGCCTTTTAGTTGTGAATTATGTGAtaataaatttgcaattaaaagaAGGTtacaaattcatataagaactCACAACGGTTACAAACCGTTTGAATGCGACAtttgtaaattcaaatttgtggATAACGAGAATTTAAAACGGCATTATTCCAGAGTTCATAAGGGCGAAAAGCCGTTTGagtgtgaattttgtgactataaaagtttCGGTAAAGGCGAATTGAAAATTCATCACAGaattcatacaggcgagaaGCCGTATACTTGTGATATTTGTGGGTTAAAACTTCGACAAAAAGGTTCCTTGAATCGACATTTAAGAAGTCATACTAGCGAGAAACCATATCAATGCAAAATTTGCGGCAGCAATTTTGCAGACTCGAAAAATCTCAGATATCATATACAACGTCATAACGGTGACGAACCATTTCAGTGTGCTATTTGCGACTTTAAAGCTCCTATTAAAAAGAAGTTAGAAAATCACATAAGAAcccatactggtgagaaaccgtttaaatgtgaaatttgcgactatcAAGCAACACAAAACTCCCATTTACAAATTCACTTAAGAACCCATACTGGTGAGAAGCCATAtacttgtgaaatttgtaatgGAAAATTTGCGCATTCGAGCAGTTTACGTGTCCATAGAAGAACCCATACCGGACAGAAACCTTTCCACTGCAAAATTTGTGATTTCAAATTTGCCCAGTTAGCAAACTTGAAGAATCATTTGAAAATTCACACTGACGAAAAGGCtttcaaatgtaaaatttgtgacaaaACTTTTAGACAAAAAAACACAATGACAGTTCATTTGGTTACGCATTCTGATGATAAGCAGTTTACGTGTCAGATTTGTGATCGTAAATTCTCACTTCGAGCAAGTTTGCGGAGGCACTTACTAACCCATACCGGAGAGAAGCTTTTTAAGTGTGACAGTTGCGAATTTAAATGTTCCCGGCAAGATGTTCTAGcaattcatttaagaacgcatacAGGTGAAAAACCGTACGCTTGTACGGTGTGCAGCTTCCAAAGTATTCGGAAAGGAAATCTGACCGCTCATATaaaaactcataccggtgaaaaaccgtataaatgtgaaatttgtgattatagaTGTTCACTAAATCAAAGCTTAGTTGTACATCTaagaactcatactggtgaaaaACCGTACGTTTGTAAAGTCTGTGGCTTCAAATTTGTAGCGGCAGGAGCGCTCAAACAGCATTCGAGGAttcataccggcgagaaaccaCATGCCTGTAATCTGTGCGACTTTAAATCTGCACTCAAATCTGGTTTAAGGGAACACTTTCGAACacataccggggaaaaaccgtttgaCTGCAATATCTGCGAGTATAAATGTGCCCGTAAAACAGACTTGGTTTGTCATATAAGAACCCATACGGGCGAGAAACCCTATAAGTGTAGTATTTGCGACTACAGGACTTCACAAAATGGACATTTACATGCTCATATAAGAACCCACACTTCAAAAAAGAAAGttcgaaataataaaaaatga
- Protein Sequence
- MKLKVEDLHHSIDIKDDDTEVKLLTSKNPLVCEICDLKFSFKGNLKRHLRIHTEKRPYYECATCGLNFLTRSKLIIHFRIHTGEKPFKCEVCDYKCTRKDVLKGHLRTHTREKPFSCNVCEAKYARKDSLTVHLRTHTGEEPFKCEICDFKSAYKGKLEVHLRIHTGENPFMCPLCDYRSDYKRNLTNHLKSHTNERPFSCELCDNKFAIKRRLQIHIRTHNGYKPFECDICKFKFVDNENLKRHYSRVHKGEKPFECEFCDYKSFGKGELKIHHRIHTGEKPYTCDICGLKLRQKGSLNRHLRSHTSEKPYQCKICGSNFADSKNLRYHIQRHNGDEPFQCAICDFKAPIKKKLENHIRTHTGEKPFKCEICDYQATQNSHLQIHLRTHTGEKPYTCEICNGKFAHSSSLRVHRRTHTGQKPFHCKICDFKFAQLANLKNHLKIHTDEKAFKCKICDKTFRQKNTMTVHLVTHSDDKQFTCQICDRKFSLRASLRRHLLTHTGEKLFKCDSCEFKCSRQDVLAIHLRTHTGEKPYACTVCSFQSIRKGNLTAHIKTHTGEKPYKCEICDYRCSLNQSLVVHLRTHTGEKPYVCKVCGFKFVAAGALKQHSRIHTGEKPHACNLCDFKSALKSGLREHFRTHTGEKPFDCNICEYKCARKTDLVCHIRTHTGEKPYKCSICDYRTSQNGHLHAHIRTHTSKKKVRNNKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01294072;
- 90% Identity
- iTF_01294072;
- 80% Identity
- iTF_01294072;