Rlut018706.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Rhagonycha lutea
Gene Symbol
-
Assembly
GCA_958510855.1
Location
OY294038.1:65600863-65602992[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 24 1.4e-06 9e-05 23.7 0.5 2 23 31 52 30 52 0.97
2 24 0.0065 0.44 12.1 0.3 1 23 59 81 59 81 0.98
3 24 0.00016 0.01 17.2 3.1 1 23 87 109 87 109 0.99
4 24 1.6e-05 0.0011 20.3 0.4 1 23 115 137 115 137 0.98
5 24 0.00036 0.024 16.1 0.4 1 23 143 165 143 165 0.99
6 24 0.00027 0.018 16.4 1.4 1 23 171 193 171 193 0.98
7 24 0.0015 0.098 14.1 0.7 1 23 199 221 199 221 0.98
8 24 1.6e-05 0.0011 20.3 1.2 1 23 227 250 227 250 0.96
9 24 0.013 0.87 11.1 1.7 1 23 256 278 256 278 0.96
10 24 3.4e-06 0.00022 22.4 0.6 1 23 284 306 284 306 0.99
11 24 4.9e-06 0.00032 21.9 1.0 1 23 312 334 312 334 0.99
12 24 0.0047 0.31 12.5 0.3 1 23 340 362 340 362 0.99
13 24 8.5e-06 0.00057 21.2 1.8 1 23 368 390 368 390 0.99
14 24 9.3e-06 0.00062 21.0 2.1 1 23 396 418 396 418 0.99
15 24 2.2e-05 0.0015 19.8 2.3 1 23 424 446 424 446 0.98
16 24 4.2e-06 0.00028 22.1 2.2 1 23 452 474 452 474 0.98
17 24 4e-06 0.00027 22.2 1.4 1 23 480 502 480 502 0.98
18 24 0.0028 0.19 13.2 2.2 1 23 508 530 508 530 0.99
19 24 0.00027 0.018 16.4 0.4 1 23 536 558 536 558 0.98
20 24 0.00012 0.0078 17.6 1.8 1 23 564 586 564 586 0.99
21 24 0.00036 0.024 16.0 0.1 1 23 592 614 592 614 0.98
22 24 0.045 3 9.5 1.8 1 23 620 642 620 642 0.96
23 24 0.03 2 10.0 4.2 1 23 648 670 648 670 0.97
24 24 8e-06 0.00053 21.3 3.8 1 23 676 698 676 698 0.99

Sequence Information

Coding Sequence
ATGAAATTGAAGGTGGAAGATCTGCATCATTCAATTGATATTAAGGATGATGATACTGAAGTCAAATTACTGACTAGCAAGAATCCATTGGTATGTGAAATTTGCGACCTCAAATTCTCAtttaagggaaatttaaaacggCATTTACGAATCCATACCGAAAAGCGGCCCTATTATGAGTGTGCAACTTGTGGCCTAAATTTTCTAACTAGATCAAAACTGATAATTCATTTCAGAATtcatactggcgagaaaccgtttaagtgtgaagtttgtgactataaatgcacTCGAAAAGATGTGTTGAAAggtcatttaagaactcatacgaGAGAAAAACCGTTTAGTTGTAATGTTTGCGAGGCCAAATATGCGCGGAAGGATAGCCTAACAGTTCACTTAAGAACGCACACCGGCGAGGAGCcatttaagtgtgaaatttgtgactttaaaagtGCATATAAGGGAAAGTTAGAAGTTCATTTAAGAATCCATACCGGTGAGAATCCTTTTATGTGTCCACTTTGTGACTATAGATCtgattataaaagaaatttgacaaatCATTTAAAATCGCATACAAACGAAAGGCCTTTTAGTTGTGAATTATGTGAtaataaatttgcaattaaaagaAGGTtacaaattcatataagaactCACAACGGTTACAAACCGTTTGAATGCGACAtttgtaaattcaaatttgtggATAACGAGAATTTAAAACGGCATTATTCCAGAGTTCATAAGGGCGAAAAGCCGTTTGagtgtgaattttgtgactataaaagtttCGGTAAAGGCGAATTGAAAATTCATCACAGaattcatacaggcgagaaGCCGTATACTTGTGATATTTGTGGGTTAAAACTTCGACAAAAAGGTTCCTTGAATCGACATTTAAGAAGTCATACTAGCGAGAAACCATATCAATGCAAAATTTGCGGCAGCAATTTTGCAGACTCGAAAAATCTCAGATATCATATACAACGTCATAACGGTGACGAACCATTTCAGTGTGCTATTTGCGACTTTAAAGCTCCTATTAAAAAGAAGTTAGAAAATCACATAAGAAcccatactggtgagaaaccgtttaaatgtgaaatttgcgactatcAAGCAACACAAAACTCCCATTTACAAATTCACTTAAGAACCCATACTGGTGAGAAGCCATAtacttgtgaaatttgtaatgGAAAATTTGCGCATTCGAGCAGTTTACGTGTCCATAGAAGAACCCATACCGGACAGAAACCTTTCCACTGCAAAATTTGTGATTTCAAATTTGCCCAGTTAGCAAACTTGAAGAATCATTTGAAAATTCACACTGACGAAAAGGCtttcaaatgtaaaatttgtgacaaaACTTTTAGACAAAAAAACACAATGACAGTTCATTTGGTTACGCATTCTGATGATAAGCAGTTTACGTGTCAGATTTGTGATCGTAAATTCTCACTTCGAGCAAGTTTGCGGAGGCACTTACTAACCCATACCGGAGAGAAGCTTTTTAAGTGTGACAGTTGCGAATTTAAATGTTCCCGGCAAGATGTTCTAGcaattcatttaagaacgcatacAGGTGAAAAACCGTACGCTTGTACGGTGTGCAGCTTCCAAAGTATTCGGAAAGGAAATCTGACCGCTCATATaaaaactcataccggtgaaaaaccgtataaatgtgaaatttgtgattatagaTGTTCACTAAATCAAAGCTTAGTTGTACATCTaagaactcatactggtgaaaaACCGTACGTTTGTAAAGTCTGTGGCTTCAAATTTGTAGCGGCAGGAGCGCTCAAACAGCATTCGAGGAttcataccggcgagaaaccaCATGCCTGTAATCTGTGCGACTTTAAATCTGCACTCAAATCTGGTTTAAGGGAACACTTTCGAACacataccggggaaaaaccgtttgaCTGCAATATCTGCGAGTATAAATGTGCCCGTAAAACAGACTTGGTTTGTCATATAAGAACCCATACGGGCGAGAAACCCTATAAGTGTAGTATTTGCGACTACAGGACTTCACAAAATGGACATTTACATGCTCATATAAGAACCCACACTTCAAAAAAGAAAGttcgaaataataaaaaatga
Protein Sequence
MKLKVEDLHHSIDIKDDDTEVKLLTSKNPLVCEICDLKFSFKGNLKRHLRIHTEKRPYYECATCGLNFLTRSKLIIHFRIHTGEKPFKCEVCDYKCTRKDVLKGHLRTHTREKPFSCNVCEAKYARKDSLTVHLRTHTGEEPFKCEICDFKSAYKGKLEVHLRIHTGENPFMCPLCDYRSDYKRNLTNHLKSHTNERPFSCELCDNKFAIKRRLQIHIRTHNGYKPFECDICKFKFVDNENLKRHYSRVHKGEKPFECEFCDYKSFGKGELKIHHRIHTGEKPYTCDICGLKLRQKGSLNRHLRSHTSEKPYQCKICGSNFADSKNLRYHIQRHNGDEPFQCAICDFKAPIKKKLENHIRTHTGEKPFKCEICDYQATQNSHLQIHLRTHTGEKPYTCEICNGKFAHSSSLRVHRRTHTGQKPFHCKICDFKFAQLANLKNHLKIHTDEKAFKCKICDKTFRQKNTMTVHLVTHSDDKQFTCQICDRKFSLRASLRRHLLTHTGEKLFKCDSCEFKCSRQDVLAIHLRTHTGEKPYACTVCSFQSIRKGNLTAHIKTHTGEKPYKCEICDYRCSLNQSLVVHLRTHTGEKPYVCKVCGFKFVAAGALKQHSRIHTGEKPHACNLCDFKSALKSGLREHFRTHTGEKPFDCNICEYKCARKTDLVCHIRTHTGEKPYKCSICDYRTSQNGHLHAHIRTHTSKKKVRNNKK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01294620;
90% Identity
iTF_01294620;
80% Identity
iTF_01294620;