Rlut018735.1
Basic Information
- Insect
- Rhagonycha lutea
- Gene Symbol
- -
- Assembly
- GCA_958510855.1
- Location
- OY294038.1:65966126-66014951[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 6 1.4 2.3e+03 -0.2 0.0 21 44 277 300 267 307 0.82 2 6 0.00047 0.81 10.8 0.0 21 46 540 565 535 571 0.86 3 6 0.34 5.9e+02 1.7 0.4 21 47 568 594 564 601 0.71 4 6 0.087 1.5e+02 3.6 0.0 20 35 623 638 612 655 0.70 5 6 0.018 31 5.8 0.1 20 44 679 703 670 707 0.81 6 6 0.0011 2 9.6 0.1 21 46 708 733 704 735 0.87
Sequence Information
- Coding Sequence
- ATGGATAAGTTTATACTTTTGACAGAATTTGAAGAAGCCATCGATGGTTTAAAAGCTCCTAGTAATCACTACGAAATTGCAAATAACAAAATGGATGTCAGTGAAGTGGAACTTGAagaattgcaccactccattgatatCAAGGAAGAAGATCCAACTGCAGAACAAGAACAAGAAGAGGCttgtaatgagGATTCTCCACGTCATTCAAATAACTACTCAAAAATTAAGACGGAAGAAGAAATGGAATTGCAGTTAAAAGAATTACATCATTCCATTGACATAAAGGAAGCTGCTCCAATTCATGAATGTCTACCGGAGAGTGACCGCAATACAGAAGTAAACTTTGAAGAAGCCATCGATAGTTTAAAAGCTCCTAGTTATGACTACAAAATTGCAAATAACAAAATGGAGGTCAGTGAAGTGGAACTTGAagaattgcaccactccattgatatCAAGGAAGAAGATCCAACTGcagaagaagaacaagaagaggcttgtaatgagGATTCTCCACGTCATTCAAATAACTACTCAAAAATTAAGACGGAAGAAGAAATGGAATTGCAGTTAAAAGAATTACATCATTCCATTGACATAAAGGAAGATGCTCCAATTCAAGAATGTCTACCGGAGAGTGACCGCAATACAGAAGAAACTCCATGGTATTCAGCGAGCTCCTTTCAAATCAAGACGGAAGACGAAGAAATTGAATTCAAGTTGGAAGATTTACACCATGACATCGACATTAAGGAAGATACTTCAATTCTAGAACCTCAACCGCACGGGGAATGCAATCCAGACACAAGCGGAAAACCATTAGCATGTGAGAAACCATTTTCGTGTGAAGTTTGTAACTTAAAATTCGCACGTAAAGGAGACTTAAAGTCTCATTTAGGAACTCATTCCGACAAGAAACTGTTTACATGTGAATTTTGTAACTACCAATGTGGTTCTGAGAGAAGATTTAAAAGTCACTTAAAAAGCGATCATCCAGATGAGAAATTGTTtatgtgtgaaatttgtaacttgaAATTTGCACGGAAAGGAGAGAATTCTCAGAGCCATTCATTTAGCTACTGCGAAATTAagacagaagaagaagaaattaagtTTGAGTTGGAAGAATTGCATCACTGCATTGAAATTAAGGAAGAGACTGAAGTGCTAGAATTTTCTCCGGATAGAGAATGCAAACCTGAAATAATTTTCAACTGTAAATATGATCAGAAAACCGATTTGGGAATTTATACTGACGCGAAACCATTTACCTGCGAAGTACATGAAGAAGACCTagatattaatttgaaaactcaTCCTAACGAGAAATCTTTTGACGACACGCCCCCTTCACACAGCTCCTGCGAAATTAAGAAGGAAGAAGAAAATACGGAATTTAACTTGGAGGATTTGCACCATTCTATTGAAATCAAAGAAGAGACTGAAGTTTTAGAATCTCAGGAAAGCCCTTATCGTTCGAATAGCTCCTCCCGAATTAaaacagaagaagaagaaatggaATTAAAGTTGGAagaattgcaccactccattgaAATTAAGGAAGAGACTGCGGATCTAGAATTTCAACTGGATAGGGAAGGTAAACCAGAAAAAGGAGAAAAGCCGTTCACAtgtcaaatttgtgactataaatggaGACGTAAAGGAGATTTAAAACGgcatttaagaacgcatactggggaaaaaccgtttggatgtgcaatttgcaattataaatgtgcacgcaAATGTGATTTAAAGCTTCATTTGCGGGctcattcaggtgataaaccgtttgtGTGTACGCTTTGCGAGTATAAAAGTGCACAGAAGGGAGATTTAATTAAACATTCAAGAACTCATACGGGCGAGAAACCTttcacatgtgaaatttgtgaatttCAATTTGCACGTAAAGCAAGTTTAACTATTCATTTGAGAACGCACACCGGTGAGAAGCAATTTATGTGTGAAGTTTGCGATTACAGATGTGCGGTCAAAGCAaacttaaaaattcattcgagaattcatacaggcgagaaaccgtttacgTGTGAAATATGTGGTTATAAATGTTCACAACAGGCGGCCTTAAAAGTTCACCTGGGAACTCACGCCAGCAGGAAACCACatacatgtgaaatttgtggttaTAAATTTACACGTAAAAGAGGTTTAAATAGACATTTAAAGGTTCATGCTGATGTTCTTTTGTAA
- Protein Sequence
- MDKFILLTEFEEAIDGLKAPSNHYEIANNKMDVSEVELEELHHSIDIKEEDPTAEQEQEEACNEDSPRHSNNYSKIKTEEEMELQLKELHHSIDIKEAAPIHECLPESDRNTEVNFEEAIDSLKAPSYDYKIANNKMEVSEVELEELHHSIDIKEEDPTAEEEQEEACNEDSPRHSNNYSKIKTEEEMELQLKELHHSIDIKEDAPIQECLPESDRNTEETPWYSASSFQIKTEDEEIEFKLEDLHHDIDIKEDTSILEPQPHGECNPDTSGKPLACEKPFSCEVCNLKFARKGDLKSHLGTHSDKKLFTCEFCNYQCGSERRFKSHLKSDHPDEKLFMCEICNLKFARKGENSQSHSFSYCEIKTEEEEIKFELEELHHCIEIKEETEVLEFSPDRECKPEIIFNCKYDQKTDLGIYTDAKPFTCEVHEEDLDINLKTHPNEKSFDDTPPSHSSCEIKKEEENTEFNLEDLHHSIEIKEETEVLESQESPYRSNSSSRIKTEEEEMELKLEELHHSIEIKEETADLEFQLDREGKPEKGEKPFTCQICDYKWRRKGDLKRHLRTHTGEKPFGCAICNYKCARKCDLKLHLRAHSGDKPFVCTLCEYKSAQKGDLIKHSRTHTGEKPFTCEICEFQFARKASLTIHLRTHTGEKQFMCEVCDYRCAVKANLKIHSRIHTGEKPFTCEICGYKCSQQAALKVHLGTHASRKPHTCEICGYKFTRKRGLNRHLKVHADVLL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01294245;
- 90% Identity
- iTF_01294245;
- 80% Identity
- iTF_01294245;