Basic Information

Insect: Rhagonycha lutea
Gene Symbol: -
Assembly: GCA_958510855.1
Location: OY294038.1:65966126-66014951[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 3.2e-05 0.0021 19.3 0.4 1 23 281 303 281 303 0.97

2 10 2 1.3e+02 4.3 4.6 1 23 309 332 309 332 0.97

3 10 0.29 19 6.9 0.1 1 14 338 351 338 354 0.90

4 10 3.5e-05 0.0023 19.3 1.7 1 23 544 566 544 566 0.99

5 10 0.025 1.6 10.3 3.5 3 23 574 594 572 594 0.97

6 10 0.00072 0.048 15.1 0.5 1 23 600 622 600 622 0.98

7 10 6.4e-06 0.00042 21.6 0.6 1 23 628 650 628 650 0.99

8 10 0.00056 0.037 15.4 0.8 1 23 656 678 656 678 0.98

9 10 2.3e-05 0.0015 19.8 0.7 1 23 684 706 684 706 0.98

10 10 1.7e-06 0.00011 23.4 2.8 1 23 712 734 712 734 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	3.2e-05	0.0021	19.3	0.4	1	23	281	303	281	303	0.97
2	10	2	1.3e+02	4.3	4.6	1	23	309	332	309	332	0.97
3	10	0.29	19	6.9	0.1	1	14	338	351	338	354	0.90
4	10	3.5e-05	0.0023	19.3	1.7	1	23	544	566	544	566	0.99
5	10	0.025	1.6	10.3	3.5	3	23	574	594	572	594	0.97
6	10	0.00072	0.048	15.1	0.5	1	23	600	622	600	622	0.98
7	10	6.4e-06	0.00042	21.6	0.6	1	23	628	650	628	650	0.99
8	10	0.00056	0.037	15.4	0.8	1	23	656	678	656	678	0.98
9	10	2.3e-05	0.0015	19.8	0.7	1	23	684	706	684	706	0.98
10	10	1.7e-06	0.00011	23.4	2.8	1	23	712	734	712	734	0.98

Sequence Information

Coding Sequence: ATGGATAAGTTTATACTTTTGACAGAATTTGAAGAAGCCATCGATGGTTTAAAAGCTCCTAGTAATCACTACGAAATTGCAAATAACAAAATGGATGTCAGTGAAGTGGAACTTGAagaattgcaccactccattgatatCAAGGAAGAAGATCCAACTGCAGAACAAGAACAAGAAGAGGCttgtaatgagGATTCTCCACGTCATTCAAATAACTACTCAAAAATTAAGACGGAAGAAGAAATGGAATTGCAGTTAAAAGAATTACATCATTCCATTGACATAAAGGAAGCTGCTCCAATTCATGAATGTCTACCGGAGAGTGACCGCAATACAGAAGTAAACTTTGAAGAAGCCATCGATAGTTTAAAAGCTCCTAGTTATGACTACAAAATTGCAAATAACAAAATGGAGGTCAGTGAAGTGGAACTTGAagaattgcaccactccattgatatCAAGGAAGAAGATCCAACTGcagaagaagaacaagaagaggcttgtaatgagGATTCTCCACGTCATTCAAATAACTACTCAAAAATTAAGACGGAAGAAGAAATGGAATTGCAGTTAAAAGAATTACATCATTCCATTGACATAAAGGAAGATGCTCCAATTCAAGAATGTCTACCGGAGAGTGACCGCAATACAGAAGAAACTCCATGGTATTCAGCGAGCTCCTTTCAAATCAAGACGGAAGACGAAGAAATTGAATTCAAGTTGGAAGATTTACACCATGACATCGACATTAAGGAAGATACTTCAATTCTAGAACCTCAACCGCACGGGGAATGCAATCCAGACACAAGCGGAAAACCATTAGCATGTGAGAAACCATTTTCGTGTGAAGTTTGTAACTTAAAATTCGCACGTAAAGGAGACTTAAAGTCTCATTTAGGAACTCATTCCGACAAGAAACTGTTTACATGTGAATTTTGTAACTACCAATGTGGTTCTGAGAGAAGATTTAAAAGTCACTTAAAAAGCGATCATCCAGATGAGAAATTGTTtatgtgtgaaatttgtaacttgaAATTTGCACGGAAAGGAGAGAATTCTCAGAGCCATTCATTTAGCTACTGCGAAATTAagacagaagaagaagaaattaagtTTGAGTTGGAAGAATTGCATCACTGCATTGAAATTAAGGAAGAGACTGAAGTGCTAGAATTTTCTCCGGATAGAGAATGCAAACCTGAAATAATTTTCAACTGTAAATATGATCAGAAAACCGATTTGGGAATTTATACTGACGCGAAACCATTTACCTGCGAAGTACATGAAGAAGACCTagatattaatttgaaaactcaTCCTAACGAGAAATCTTTTGACGACACGCCCCCTTCACACAGCTCCTGCGAAATTAAGAAGGAAGAAGAAAATACGGAATTTAACTTGGAGGATTTGCACCATTCTATTGAAATCAAAGAAGAGACTGAAGTTTTAGAATCTCAGGAAAGCCCTTATCGTTCGAATAGCTCCTCCCGAATTAaaacagaagaagaagaaatggaATTAAAGTTGGAagaattgcaccactccattgaAATTAAGGAAGAGACTGCGGATCTAGAATTTCAACTGGATAGGGAAGGTAAACCAGAAAAAGGAGAAAAGCCGTTCACAtgtcaaatttgtgactataaatggaGACGTAAAGGAGATTTAAAACGgcatttaagaacgcatactggggaaaaaccgtttggatgtgcaatttgcaattataaatgtgcacgcaAATGTGATTTAAAGCTTCATTTGCGGGctcattcaggtgataaaccgtttgtGTGTACGCTTTGCGAGTATAAAAGTGCACAGAAGGGAGATTTAATTAAACATTCAAGAACTCATACGGGCGAGAAACCTttcacatgtgaaatttgtgaatttCAATTTGCACGTAAAGCAAGTTTAACTATTCATTTGAGAACGCACACCGGTGAGAAGCAATTTATGTGTGAAGTTTGCGATTACAGATGTGCGGTCAAAGCAaacttaaaaattcattcgagaattcatacaggcgagaaaccgtttacgTGTGAAATATGTGGTTATAAATGTTCACAACAGGCGGCCTTAAAAGTTCACCTGGGAACTCACGCCAGCAGGAAACCACatacatgtgaaatttgtggttaTAAATTTACACGTAAAAGAGGTTTAAATAGACATTTAAAGGTTCATGCTGATGTTCTTTTGTAA
Protein Sequence: MDKFILLTEFEEAIDGLKAPSNHYEIANNKMDVSEVELEELHHSIDIKEEDPTAEQEQEEACNEDSPRHSNNYSKIKTEEEMELQLKELHHSIDIKEAAPIHECLPESDRNTEVNFEEAIDSLKAPSYDYKIANNKMEVSEVELEELHHSIDIKEEDPTAEEEQEEACNEDSPRHSNNYSKIKTEEEMELQLKELHHSIDIKEDAPIQECLPESDRNTEETPWYSASSFQIKTEDEEIEFKLEDLHHDIDIKEDTSILEPQPHGECNPDTSGKPLACEKPFSCEVCNLKFARKGDLKSHLGTHSDKKLFTCEFCNYQCGSERRFKSHLKSDHPDEKLFMCEICNLKFARKGENSQSHSFSYCEIKTEEEEIKFELEELHHCIEIKEETEVLEFSPDRECKPEIIFNCKYDQKTDLGIYTDAKPFTCEVHEEDLDINLKTHPNEKSFDDTPPSHSSCEIKKEEENTEFNLEDLHHSIEIKEETEVLESQESPYRSNSSSRIKTEEEEMELKLEELHHSIEIKEETADLEFQLDREGKPEKGEKPFTCQICDYKWRRKGDLKRHLRTHTGEKPFGCAICNYKCARKCDLKLHLRAHSGDKPFVCTLCEYKSAQKGDLIKHSRTHTGEKPFTCEICEFQFARKASLTIHLRTHTGEKQFMCEVCDYRCAVKANLKIHSRIHTGEKPFTCEICGYKCSQQAALKVHLGTHASRKPHTCEICGYKFTRKRGLNRHLKVHADVLL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01294618;
90% Identity: iTF_01294618;
80% Identity: iTF_01294618;