Basic Information

Insect: Rhagonycha lutea
Gene Symbol: -
Assembly: GCA_958510855.1
Location: OY294038.1:19007782-19009227[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.00031 0.02 16.3 0.8 2 23 92 113 91 113 0.97

2 14 0.2 13 7.4 5.3 2 23 118 139 116 139 0.93

3 14 5.3e-05 0.0035 18.7 2.2 1 23 144 166 144 166 0.98

4 14 0.035 2.3 9.8 7.2 1 23 172 194 172 194 0.97

5 14 0.1 6.9 8.3 4.0 1 23 200 222 200 222 0.94

6 14 0.094 6.3 8.4 3.0 1 23 228 250 228 250 0.96

7 14 0.003 0.2 13.2 1.2 1 23 256 279 256 279 0.97

8 14 0.49 32 6.2 4.8 1 23 285 307 285 308 0.92

9 14 0.24 16 7.2 0.7 1 23 315 337 315 337 0.95

10 14 1.1e-05 0.00072 20.8 2.2 1 23 343 365 343 365 0.97

11 14 0.0002 0.013 16.8 0.2 1 23 371 393 371 393 0.98

12 14 0.00012 0.0077 17.6 0.0 1 23 399 421 399 421 0.98

13 14 3.6e-05 0.0024 19.2 5.4 1 23 427 449 427 449 0.99

14 14 0.00017 0.011 17.1 3.4 1 23 455 477 455 477 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.00031	0.02	16.3	0.8	2	23	92	113	91	113	0.97
2	14	0.2	13	7.4	5.3	2	23	118	139	116	139	0.93
3	14	5.3e-05	0.0035	18.7	2.2	1	23	144	166	144	166	0.98
4	14	0.035	2.3	9.8	7.2	1	23	172	194	172	194	0.97
5	14	0.1	6.9	8.3	4.0	1	23	200	222	200	222	0.94
6	14	0.094	6.3	8.4	3.0	1	23	228	250	228	250	0.96
7	14	0.003	0.2	13.2	1.2	1	23	256	279	256	279	0.97
8	14	0.49	32	6.2	4.8	1	23	285	307	285	308	0.92
9	14	0.24	16	7.2	0.7	1	23	315	337	315	337	0.95
10	14	1.1e-05	0.00072	20.8	2.2	1	23	343	365	343	365	0.97
11	14	0.0002	0.013	16.8	0.2	1	23	371	393	371	393	0.98
12	14	0.00012	0.0077	17.6	0.0	1	23	399	421	399	421	0.98
13	14	3.6e-05	0.0024	19.2	5.4	1	23	427	449	427	449	0.99
14	14	0.00017	0.011	17.1	3.4	1	23	455	477	455	477	0.98

Sequence Information

Coding Sequence: ATGGAGGAACGAGATACTGTTCAGGCTGTTcttgtaaattataatattgcaaTTAAAACCGAGATGGAAAATGTGGACTGCAAGTTTGAAGATTTGCACCATGCAATCGACATTAAAGAGGAAGAAAATTCATTATCCGAATCTCAACGTTCTGATGAACTACAAATCCAACCACCCTTCAGAAACCAATTGCATGCTGCGAAGAGACCACAGAAAAAATTGGAATTGGAAAGTTTTTTGAAAGATCTTGATTTTGCAAAGGAAAAAAGTGTTAAGTGTGAAGTTTGTGGCAATCAGTACTCCAACACCAATAAGTTGAAACGCCATTTAAAAGTCCATGAGAAAAAATGTGAGTGTAGAATATGTGGCTTTAAGTGCCTATATAAAGGACAGTTGAAGATCCACATGAAAAATCATGGAGGAGTGCTATTTGAATGTGCAACTTGCGCTCATAAATTTTCCCATAAGGCAAATTTAGCAATCCATATAAGAACGCACactggtgaaaaaccgtttTCATGTGGATTTTGTCACTACAAATGTACCCAGAAAAGGCAGTTGACCATACACCTGAGCTATCATAAAAATGAGAAACCATTTCTGTGCAAATTTTGCAATTACAAATGTTACGACTATGGAAGCTTAAAAGTTCATCTGACTAACCATGTTGGTGAAAAAGCATTCCAATGTGAGACGTGCAATTacaaatgtaaatcaaaatatattttggacAAACATGTGATCATTCATACCGGGGATAAACCATTTAAGTGCGCggtttgcgactataaatgttcATTCCGAGAAGGTCTACGTATCCACGTCCTAAGAGTccatacaggcgagaaaccattCGCGTGTGAATTCTGCGATTATAAATGTTTAACTAAAAGTCAGTTGAGGGTCCACGAAACCAATCATCACGACGCGGGTGAGAAGCCGTACCTTTGTGAAATGTGTGGATTTTTAACTACAAATTTTGGAATGTTACAAATGCACTTTACAACGCACACGGGCGAGAAGCCTTTTGCATGTGAATATTGTGAATTTAAATGTGCAAGGAAGGGAAATTTGAAAAGGCACATACGAGTGcataccggggagaaaccgttcgAGTGTGTActttgcgattataaagcttCGCAGAAGGGTGATTTACAGTTGCAtataaaaactcacacaggggaaAAACTTTTTCCATGTGAAATTTGCGGGGTGAGGTGGCCGCAGAGAGCAGATTTGAAAAAACATATGAGAATtcatactggcgagaaaccgtatCAATGTACGTATTGTGAATATCGGTGTGCGCACAAGCCAAGTTTGAAAGTGCACATGAGAACTCATACGGGTGAGAAACCTTACGTTTGTgaaaaatgtgattttaaatgTTCACGAAGAGAAACTTTAAGAAAACACCTTGCAAGtcatgtaaatattatttaa
Protein Sequence: MEERDTVQAVLVNYNIAIKTEMENVDCKFEDLHHAIDIKEEENSLSESQRSDELQIQPPFRNQLHAAKRPQKKLELESFLKDLDFAKEKSVKCEVCGNQYSNTNKLKRHLKVHEKKCECRICGFKCLYKGQLKIHMKNHGGVLFECATCAHKFSHKANLAIHIRTHTGEKPFSCGFCHYKCTQKRQLTIHLSYHKNEKPFLCKFCNYKCYDYGSLKVHLTNHVGEKAFQCETCNYKCKSKYILDKHVIIHTGDKPFKCAVCDYKCSFREGLRIHVLRVHTGEKPFACEFCDYKCLTKSQLRVHETNHHDAGEKPYLCEMCGFLTTNFGMLQMHFTTHTGEKPFACEYCEFKCARKGNLKRHIRVHTGEKPFECVLCDYKASQKGDLQLHIKTHTGEKLFPCEICGVRWPQRADLKKHMRIHTGEKPYQCTYCEYRCAHKPSLKVHMRTHTGEKPYVCEKCDFKCSRRETLRKHLASHVNII

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00271719;
90% Identity: iTF_01292436;
80% Identity: -