Cnig009501.1
Basic Information
- Insect
- Cantharis nigra
- Gene Symbol
- -
- Assembly
- GCA_958510845.1
- Location
- OY294029.1:12872527-12873954[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 7.8e-05 0.0041 18.3 0.4 2 23 87 108 86 108 0.97 2 14 0.059 3.1 9.3 4.3 2 23 113 134 112 134 0.96 3 14 1.1e-05 0.0006 20.9 0.6 1 23 139 161 139 161 0.98 4 14 0.0041 0.21 12.9 4.9 1 23 167 189 167 189 0.97 5 14 0.11 5.8 8.4 4.1 1 23 195 217 195 217 0.94 6 14 0.28 14 7.2 2.9 1 23 223 245 223 245 0.96 7 14 0.0015 0.077 14.3 1.0 1 23 251 274 251 274 0.97 8 14 2.5 1.3e+02 4.2 3.7 1 23 280 302 280 303 0.92 9 14 0.27 14 7.2 0.7 1 23 310 332 310 332 0.95 10 14 1.8e-05 0.00093 20.3 2.4 1 23 338 360 338 360 0.97 11 14 0.0097 0.5 11.7 0.4 1 23 366 388 366 388 0.98 12 14 0.00013 0.0069 17.6 0.0 1 23 394 416 394 416 0.98 13 14 4.1e-05 0.0021 19.2 5.4 1 23 422 444 422 444 0.99 14 14 0.00044 0.023 16.0 4.5 1 23 450 472 450 472 0.98
Sequence Information
- Coding Sequence
- ATGGAGAAAGAAGATgcaattaatacaaatttcgaTATTGTAATTAAAACCGAAGTAGAAAATGTGGATTGTAAGTTCGAAGATTTGCACCATTCGATCGATATCAAAGAGGAAGCAGGTTTATTAGCTGAATCTCGACGTACCGAAGAAGCACAAGCCCAATCAACCGTAAAAAATCAATTGGATACAAAGACAATAGcattgaaaaagttaaatttggaaATGTGTTTAAAAAATCTTATCAAGAAAGAAATTATTAAGTGTGAAGTTTGTGGAAAGCAGTATCCCAGCACGATCAAGTTAAAACGACATTTGAAAGTTCACGAGAAAAAGTGTGTATGTAAAATATGTGGTTATCGGTGTCTGTATAAAGGACAGCTAAATACCCACGTGAAGAGTCACGGAGGTGTGAAATTCGAATGTGCCACTTGCGGTAATAAATTTGCGCATAAGGCAAATTTAGCAATTCACATAAGAAAACACACCGGTGAGAAACCCTTTGAATGTAAACTTTGTTCCTACAAATGTACACAGAAAAGACAGCTGACTGTTCACTTGAGTTATCATACGAACGAAAAACcgtttttgtgtaaattttgtaattttaaatgttatgatAATGGAAGCTTGAAAGTTCATCTGACCAATCATGCAGGCGAAAAGGCATTTCAATGTGAGACCTGCAGTTATAaatgtaaatcaaaatatattttggataAACACGTGATAATTCATACTGGGGAGAAACCTTTCAAGTGCGCGGTTTGTGGCTATAAATGTTCGTTTAGAGAAGGTTTGCGGATTCACGTCCTAAGGAttcatacgggtgagaaacctTTTGCTTGTGCGCTTTGTGATTATAGATGTTTAACAAAAAACCAGTTGAAAGTTCACGAAACTAATCATCACAATgcgggggaaaaaccgtattTGTGTGAAATGTGCGGATTTTTAACTACCAATTTTGGAATGCTGCAAATGCATTTTACCACCCACACGGGCGAAAAACCTTTTGCGTGCgaattttgcgattttaaatgtgcaagaaaaggaaatttgaaaagACACATACGAGTGCACACCGGTGAAAAGCCGTACGAATGTGTACTGTGCGATTATAAAGCTTCGCAGAAAGGTGATTTGCAATTTCATATAAAAACTCACACCGGTGAAAAATTATTTCCATGTGAAATTTGTGGAGTTCGATGGCCGCAAAGAGcggatttaaaaaaacatatgaGAATTCATACTGGTGAAAAACCCTATCAGTGTACTTATTGCGAGTACAGGTGTGCGCACAAACCAAGTTTGAAAGTGCATATGAGGActcatacgggtgagaaacccTATGTTTGTGATAAATgtgattttaaatgttctcgaAGAGAAACTTTACGAAAGCATTTAACAAGTCATATTATAATTTAG
- Protein Sequence
- MEKEDAINTNFDIVIKTEVENVDCKFEDLHHSIDIKEEAGLLAESRRTEEAQAQSTVKNQLDTKTIALKKLNLEMCLKNLIKKEIIKCEVCGKQYPSTIKLKRHLKVHEKKCVCKICGYRCLYKGQLNTHVKSHGGVKFECATCGNKFAHKANLAIHIRKHTGEKPFECKLCSYKCTQKRQLTVHLSYHTNEKPFLCKFCNFKCYDNGSLKVHLTNHAGEKAFQCETCSYKCKSKYILDKHVIIHTGEKPFKCAVCGYKCSFREGLRIHVLRIHTGEKPFACALCDYRCLTKNQLKVHETNHHNAGEKPYLCEMCGFLTTNFGMLQMHFTTHTGEKPFACEFCDFKCARKGNLKRHIRVHTGEKPYECVLCDYKASQKGDLQFHIKTHTGEKLFPCEICGVRWPQRADLKKHMRIHTGEKPYQCTYCEYRCAHKPSLKVHMRTHTGEKPYVCDKCDFKCSRRETLRKHLTSHIII
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01292436; iTF_01294225;
- 90% Identity
- -
- 80% Identity
- -