Basic Information

Insect: Rhagonycha fulva
Gene Symbol: -
Assembly: GCA_905340355.1
Location: HG996554.1:106278991-106280430[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.00025 0.0071 17.6 2.1 2 23 90 111 89 111 0.97

2 14 0.22 6.2 8.3 4.8 2 23 116 137 114 137 0.93

3 14 3.3e-06 9.5e-05 23.5 2.3 1 23 142 164 142 164 0.98

4 14 0.04 1.2 10.6 7.4 1 23 170 192 170 192 0.97

5 14 0.56 16 7.0 5.2 1 23 198 220 198 220 0.94

6 14 0.2 5.7 8.4 3.0 1 23 226 248 226 248 0.96

7 14 0.0062 0.18 13.2 1.2 1 23 254 277 254 277 0.97

8 14 1 29 6.2 5.8 1 23 283 305 283 306 0.93

9 14 0.49 14 7.2 0.7 1 23 313 335 313 335 0.95

10 14 2.2e-05 0.00065 20.9 2.2 1 23 341 363 341 363 0.97

11 14 0.00011 0.0033 18.6 0.3 1 23 369 391 369 391 0.98

12 14 0.00015 0.0042 18.3 0.0 1 23 397 419 397 419 0.98

13 14 7.5e-05 0.0022 19.2 5.4 1 23 425 447 425 447 0.99

14 14 0.00036 0.01 17.1 3.4 1 23 453 475 453 475 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.00025	0.0071	17.6	2.1	2	23	90	111	89	111	0.97
2	14	0.22	6.2	8.3	4.8	2	23	116	137	114	137	0.93
3	14	3.3e-06	9.5e-05	23.5	2.3	1	23	142	164	142	164	0.98
4	14	0.04	1.2	10.6	7.4	1	23	170	192	170	192	0.97
5	14	0.56	16	7.0	5.2	1	23	198	220	198	220	0.94
6	14	0.2	5.7	8.4	3.0	1	23	226	248	226	248	0.96
7	14	0.0062	0.18	13.2	1.2	1	23	254	277	254	277	0.97
8	14	1	29	6.2	5.8	1	23	283	305	283	306	0.93
9	14	0.49	14	7.2	0.7	1	23	313	335	313	335	0.95
10	14	2.2e-05	0.00065	20.9	2.2	1	23	341	363	341	363	0.97
11	14	0.00011	0.0033	18.6	0.3	1	23	369	391	369	391	0.98
12	14	0.00015	0.0042	18.3	0.0	1	23	397	419	397	419	0.98
13	14	7.5e-05	0.0022	19.2	5.4	1	23	425	447	425	447	0.99
14	14	0.00036	0.01	17.1	3.4	1	23	453	475	453	475	0.98

Sequence Information

Coding Sequence: ATGGAAAACCAAGATAGTGTTCAGGCTGTTATTTTAAATTGTAATATTGCAATTAAAACCGAAATAGAAAGTGTGGACTGCAACTTTGAAGATTTGCACCATGCAATCGACATTAAAGAGGAAGAAAATTGTTTATCCGAATCTCGACGTTCTGACGAACTACAAATCCAATCACCCGTTAGAATCCAATTGCATAAAGAAAAGAGGACAAGGAAAGCAGTGAAATTGGAAAGATTTTTAAAAAATTTTGCAAAGGAAGAAATTGTTAAGTGTGAAGTTTGTGGTAAGAAGTGCCCCAGCACCAATAAGTTGCAACGCCATTTAAAAGTCCACGAGAAGAAATGTGAGTGTAGAATATGTGGATTTAAGTGTCTATATAAAGGACAATTGAACATCCACATGAAAAGTCATGCAGGGCTGAAATTTGAATGTGCAACTTGCGGCCATAAATTTTCTCATAAGGCAAATTTGGCAATTCACATAAGAACCCACACAGGTGAAAAACCGTTCTCTTGTGAATTTTGCCACTACAAGTGTTCTCAGAAACGGCAGTTGACCATTCACCTGAGTTATCATAAAAATGAGAAACCATTTCTGTGCAAATTTTGCAATTACAAATGTTACGATTATAGAAGCTTAAAAGTTCATCTGACCAATCACGTTGGTGAGAAAGCCTTTCAATGTGAGACTTGCAATTACAAATGTAAATCAAAATATATTTTGGACAAACACGTGATCATTCATACCGGAGAAAAACCATTTAAGTGCGCTGTTTGTGATTATAAATGTTCCTTCCGTGAAGGGTTACGTATCCACGTTCTAAGAGTCCATACCGGGGAGAAACCGTTTTCTTGTGAATTTTGCGACTATAAATGTTTAACAAAAAGCCAGCTGAGGGTCCACGAAACTAACCATCACGACGCCGGTGAGAAACCGTACCTTTGTGAAATGTGTGGATTTTTAACTACAAATTTTGGAATGCTACAAATGCATTTTACAACGCACACGGGCGAGAAGCCCTTTGCTTGTGAATATTGCGAATTTAAATGTGCAAGGAAGGGAAATTTAAAAAGGCACATTCGAGTGCATACCGGCGAAAAACCGTTCGAATGTGAACTTTGTGATTACAAAGCTTCGCAAAAAGGTGATCTACAGTTGCATATAAAAACTCACACAGGTGAGAAACTTTTTCCATGTGAAATTTGCGGGGTGAGATGGCCCCAAAAAGCAGATTTGAAAAAACATATGAGAATTCATACTGGCGAGAAACCATATCAATGTACGTATTGTGAATACAGGTGCGCGCACAAACCAAGTTTAAAAGTGCACATGAGAACTCATACGGGTGAGAAACCGTACGTTTGTGAAAAATGTGACTTTAAATGTTCGCGAAGAGAAACTTTAAGAAAACACCTTGCAAGTCACGTAGATATTGTTTAA
Protein Sequence: MENQDSVQAVILNCNIAIKTEIESVDCNFEDLHHAIDIKEEENCLSESRRSDELQIQSPVRIQLHKEKRTRKAVKLERFLKNFAKEEIVKCEVCGKKCPSTNKLQRHLKVHEKKCECRICGFKCLYKGQLNIHMKSHAGLKFECATCGHKFSHKANLAIHIRTHTGEKPFSCEFCHYKCSQKRQLTIHLSYHKNEKPFLCKFCNYKCYDYRSLKVHLTNHVGEKAFQCETCNYKCKSKYILDKHVIIHTGEKPFKCAVCDYKCSFREGLRIHVLRVHTGEKPFSCEFCDYKCLTKSQLRVHETNHHDAGEKPYLCEMCGFLTTNFGMLQMHFTTHTGEKPFACEYCEFKCARKGNLKRHIRVHTGEKPFECELCDYKASQKGDLQLHIKTHTGEKLFPCEICGVRWPQKADLKKHMRIHTGEKPYQCTYCEYRCAHKPSLKVHMRTHTGEKPYVCEKCDFKCSRRETLRKHLASHVDIV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00271719;
90% Identity: iTF_01294225;
80% Identity: -