Rlut032696.1
Basic Information
- Insect
- Rhagonycha lutea
- Gene Symbol
- Znf423
- Assembly
- GCA_958510855.1
- Location
- OY294042.1:27146900-27164634[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 4.6e-06 0.0003 22.0 0.5 1 23 86 108 86 108 0.97 2 22 0.11 7.5 8.2 3.3 3 23 116 136 114 136 0.97 3 22 5.4e-06 0.00036 21.8 5.9 1 23 142 164 142 164 0.99 4 22 0.00017 0.012 17.0 0.3 1 23 170 192 170 192 0.98 5 22 0.049 3.2 9.3 0.2 1 23 206 229 206 229 0.95 6 22 1.8 1.2e+02 4.4 0.3 2 23 261 283 260 283 0.92 7 22 1.3 88 4.8 0.3 1 20 325 344 325 345 0.93 8 22 0.014 0.96 11.0 0.0 1 23 440 462 440 462 0.97 9 22 0.00026 0.017 16.5 0.0 2 23 477 498 477 498 0.94 10 22 1.8 1.2e+02 4.4 1.6 3 23 508 530 506 530 0.76 11 22 0.86 57 5.4 2.7 1 23 535 558 535 558 0.96 12 22 0.15 10 7.8 1.8 2 23 622 644 621 644 0.95 13 22 1.8 1.2e+02 4.4 0.2 3 23 705 726 703 727 0.90 14 22 0.00063 0.042 15.3 4.4 2 23 738 759 737 759 0.97 15 22 0.0019 0.13 13.8 0.3 1 23 768 790 768 790 0.97 16 22 0.51 34 6.1 1.5 2 23 798 819 798 819 0.97 17 22 0.53 36 6.1 0.1 1 13 865 877 865 881 0.86 18 22 0.037 2.5 9.7 0.3 1 23 928 950 928 950 0.94 19 22 0.05 3.3 9.3 1.3 1 23 957 979 957 979 0.95 20 22 0.0017 0.11 13.9 0.3 1 23 987 1009 987 1009 0.97 21 22 0.53 35 6.1 1.7 1 23 1016 1038 1016 1038 0.94 22 22 0.8 53 5.5 0.2 2 21 1071 1089 1070 1090 0.85
Sequence Information
- Coding Sequence
- atgaAAATGATGTTTAAAGGCAATAGCAGCAGATTGGAATTGTTAATTGAGAAAATTCACAATCATAAAGGAAATTCGGAAATGGCTAATACAGTTTCCAGAGgATCAATTGGAACTGAACACGAAAGTTGGGGTTCCAACACTCCAGAACAAGCGTCACCAGCACCAAGTTCATGTCCAACTCCCTGTTCAAGTTTAAGCGATATCGCTGAAAGTGATGTTGCTTTCACTGTAGGAATTACAGAAACGACACCTTATGCATGCAAAATATGTAATAAGGCATTTGCTAGATCATCTTTATTAAGTAAACACGAACAGTCTCACACCGACCATCTTCAGTATGGCTGTTCATATTGCCCCCGCCTATTTAAACATAAACGGTCTAGGGATCGTCATATTAAGCTTCATACTGGtgataaaaaatacaaatgtatGCATTGCCAAACTGCATTTTCCAGAAGTGATCACTTAAAAATTCATATGAAGACACATGACAATAGTAAGCCATTTCGTTGCCTCATTTGTAATCGCGGATATAATACGGCTGCTGCATTAACTTCTCATCAGCAAAGTCACTCAAAACAAGTTGCAGATAGAAGTATTAGTCCAGAAAGTTTCAAATGCCTTCAATGTTCAGAATTATTTAGCGAATACGACCAACTTCagATGCACGTAGCAAGTgttcataacaatattttattaaattcatcATCACCAAATTCTTCATCTGTACCAAAAcatgaaataattacaaattctCAAATAGAATTAACGAAGTGGGTGTGCATGTACTGCAGTCGGGACTTTTTGATTATCGAAGAACTACAACATCATATCAACACTGACCATCAAGCTCTTGTCAATGGTAACTTTCTAGGAAATCATGGAAAGAATGCAGTTGATTCACCTTTAACACCAAACAACAACGAGTTATCCTTAATAAACGACAGTCACTCAGATAGTGCACCCACTTACGCTTGTGAAAGTTGTACCATGCATTTTGATTCCGTCGATAAACTAAGGATGCATGAAAATTGCATTCATTGGAAGCCACCTATCGCACCTTCATCTAAATCGTTTAATAAAGATTGTAGCCCATGCTTGCTTCCAACTCAAAATTTTAGTGGAACTGACGGGTTAACTAACTCCAACAGTATTCAACCAATTCAACTACAGCCTACCGATTTAAGTCGAAAACGAAGAGGGGCTGATGTAGAGGAAAAAATTTCACCTAAACGAATGAACAATAATACGACCACCGTGCCAAATGTAACCAGTAGTTCTCACGATTCTACCAAAAAGGAAGAGTGGACCAGCTACATATGCAGTATATGCGGAACTCAGTTACCAAATTTTGCATCCTTTATGGTGCATATGGATATTCACATGTCTGTCAGTGCAACTCCGTCTAATGTTATCTTAGGAGGATATTGTCCTTTGTGCGGTGAAGCCTACAGAGATCAAACTGAACTTAATAATCATATTGTGTTACACACACTAACCTATAAACTTGGATGGTGTTGTCGCGTTTGCAAAAAAGTTTTCAACGATAATTTGGAAGACTTTCAGCGGCACTTAATGGAAAACCATGCGTGTACGACTTATAAATGTTGCGTTTGCGAACAACTTTTTGAATCTAAAACGGCCATGTTGATGCACTTAACCAAGAAACACAGTAACGAATGTCAACATTTTCGTTGTAAATTTTGCCCAGAACAAATATTCCATAACCAAATAAGTGCAGAAATGCATATATCTCAGCATGTACCACGTCTATTTAACCAAACACGAAAGTCGTCCAATTATGGAGCCTATCCATTTCAAAACGAATTTAACGCTAGAGTGGGTTCGGTAAAAAGTTTGCAATGTCCGTTCTGTCGCCAATGCTTTAAAGGAGAATATTTACAACAAATGCATATTCTCAAGGATCACAAAGATTTCCTCGAGgcaCACGGTTCCCGAGTCGCAGAGGAATGCTCTATGGACCAGCTGTCTTCTTCGAGAGGACCAAAGGAAGGACAGGCAAATTCACCAACTATTCCATTCACCAGTTCATTACCTTTATCAGAAAGTATGTCGAGATATGATAAAAGTTTAATGGAAACCATAATATGTGATATTTGTGGTTCTTCAGATTTCAACAACGATTCCGAATTAGCTGCTCATAAAAAACTTCATCATGTCAAGTCAAAAATTGGTCCTGTGAGCTTACAGTGTGCATATTGTAACGAGCACTGCAAATCTCGTTCCGATTTAGAAAATCACATGAAAAATCACCAAATAAATAGCAACAAAGGTAAACATAAATGCAACATTTGTGATGAAATTTATTCCTCTGCCATAACTTTAGCCGAACATAAATTATCCCACTGTAAAATAGTGTCTGGAAACACATGCACTCAATGCAAAACAATTCTTTCGGACGAACAATCATTTTATTCTCATCAGCTAAAACACAGTTCAGTTTTGAACAAATCGAATGCTCAAATATCTCTACCGGCTAACTGCATAATTTGCTGCCAAACGTTACAAACAGACGTAGAAATTAAACTCCATGCTAATTTTCATCTCCAACACTTACTGCATAAGGAATACTTGTGCAAtatatgcaataaaatttttgatactCGTACAGGAATCACAATTCCAAGTTACGAAAAAAATTCAGAAGCTTTGCAGATTTCGGTGTGTAAAGAGTGTATTAATAAGTGTGGCAATAACAGCAGTTCCAATAGTCCAAGACTTACCAATATAAAAAGcgaaaatttggataaaaaaatatattcatgCATAAAGTGCCCCCAAACATTTGAAACTGAAAGTGAAGTAAAAAAACATGCTGGAACACATATTAGTGATCGAATTAACCACGAATGTCACATTTGTAGGAGTATCTTTTCAACACCTCTGAAATTACAGTTGCATGTAATTGAGCACAGTTTCTTTGGTACAGGCCAATTTAGGTGTTATATATGCAGTTCAGTCTTTACAACTGCAAATGGATTACTTTCTCATATGCTCGAACATGGAGCTAACTCCAAACCTTACGAATGTGCTACTTGCCAAATGAAGTTCTTTTTCCAGACTGAACTGGATAACCACAAATACGAACATATTATATCGCAAGCAGTTGCTCAATCAATAAATGTTAATAGTGTAGAAGAATCTGAAGTGTTAAATTCGGAAAAGCTAAAAATGGAACATTTAGGAAAGTGTCCATACTGTGATATGACAACATCGCATGTTTACTTAGATGTACATATAAggttttgtttacaaaatccCGATATTAAAAAACGTCACGAAAATAAACGCAACGCAAAATTTGTAGAAAGCACAAATTCTGTTTCTGAAAGTGAGGATAaagctttataa
- Protein Sequence
- MKMMFKGNSSRLELLIEKIHNHKGNSEMANTVSRGSIGTEHESWGSNTPEQASPAPSSCPTPCSSLSDIAESDVAFTVGITETTPYACKICNKAFARSSLLSKHEQSHTDHLQYGCSYCPRLFKHKRSRDRHIKLHTGDKKYKCMHCQTAFSRSDHLKIHMKTHDNSKPFRCLICNRGYNTAAALTSHQQSHSKQVADRSISPESFKCLQCSELFSEYDQLQMHVASVHNNILLNSSSPNSSSVPKHEIITNSQIELTKWVCMYCSRDFLIIEELQHHINTDHQALVNGNFLGNHGKNAVDSPLTPNNNELSLINDSHSDSAPTYACESCTMHFDSVDKLRMHENCIHWKPPIAPSSKSFNKDCSPCLLPTQNFSGTDGLTNSNSIQPIQLQPTDLSRKRRGADVEEKISPKRMNNNTTTVPNVTSSSHDSTKKEEWTSYICSICGTQLPNFASFMVHMDIHMSVSATPSNVILGGYCPLCGEAYRDQTELNNHIVLHTLTYKLGWCCRVCKKVFNDNLEDFQRHLMENHACTTYKCCVCEQLFESKTAMLMHLTKKHSNECQHFRCKFCPEQIFHNQISAEMHISQHVPRLFNQTRKSSNYGAYPFQNEFNARVGSVKSLQCPFCRQCFKGEYLQQMHILKDHKDFLEAHGSRVAEECSMDQLSSSRGPKEGQANSPTIPFTSSLPLSESMSRYDKSLMETIICDICGSSDFNNDSELAAHKKLHHVKSKIGPVSLQCAYCNEHCKSRSDLENHMKNHQINSNKGKHKCNICDEIYSSAITLAEHKLSHCKIVSGNTCTQCKTILSDEQSFYSHQLKHSSVLNKSNAQISLPANCIICCQTLQTDVEIKLHANFHLQHLLHKEYLCNICNKIFDTRTGITIPSYEKNSEALQISVCKECINKCGNNSSSNSPRLTNIKSENLDKKIYSCIKCPQTFETESEVKKHAGTHISDRINHECHICRSIFSTPLKLQLHVIEHSFFGTGQFRCYICSSVFTTANGLLSHMLEHGANSKPYECATCQMKFFFQTELDNHKYEHIISQAVAQSINVNSVEESEVLNSEKLKMEHLGKCPYCDMTTSHVYLDVHIRFCLQNPDIKKRHENKRNAKFVESTNSVSESEDKAL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00273027; iTF_00271758; iTF_00927997; iTF_00268958; iTF_01292390; iTF_00270266;
- 90% Identity
- iTF_00273027;
- 80% Identity
- -