Clat027692.1
Basic Information
- Insect
- Cantharis lateralis
- Gene Symbol
- Znf423
- Assembly
- GCA_963170105.1
- Location
- OY720630.1:17977687-17989595[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 5e-06 0.00026 22.0 0.5 1 23 84 106 84 106 0.97 2 22 0.12 6.4 8.2 3.3 3 23 114 134 112 134 0.97 3 22 9.7e-05 0.0051 18.0 5.3 1 23 140 162 140 162 0.98 4 22 0.00019 0.0099 17.1 0.3 1 23 168 190 168 190 0.98 5 22 0.017 0.89 10.9 0.2 1 23 204 227 204 227 0.96 6 22 1.9 1e+02 4.4 0.3 2 23 258 280 257 280 0.92 7 22 0.91 47 5.5 0.2 1 20 322 341 322 342 0.93 8 22 0.016 0.82 11.0 0.0 1 23 436 458 436 458 0.97 9 22 0.00028 0.015 16.5 0.0 2 23 473 494 473 494 0.94 10 22 1.9 1e+02 4.4 1.6 3 23 504 526 502 526 0.76 11 22 0.94 49 5.4 2.7 1 23 531 554 531 554 0.96 12 22 0.16 8.6 7.8 1.8 2 23 618 640 617 640 0.95 13 22 0.97 50 5.4 0.2 3 23 701 722 699 723 0.92 14 22 0.00069 0.036 15.3 4.4 2 23 734 755 733 755 0.97 15 22 0.0021 0.11 13.8 0.3 1 23 764 786 764 786 0.97 16 22 0.55 29 6.2 1.5 2 23 794 815 794 815 0.97 17 22 0.58 30 6.1 0.1 1 13 861 873 861 877 0.86 18 22 0.019 0.96 10.8 0.2 1 23 924 946 924 946 0.95 19 22 0.055 2.9 9.3 1.3 1 23 953 975 953 975 0.95 20 22 0.0019 0.097 13.9 0.3 1 23 983 1005 983 1005 0.97 21 22 0.58 30 6.1 1.7 1 23 1012 1034 1012 1034 0.94 22 22 0.87 45 5.5 0.2 2 21 1067 1085 1066 1086 0.85
Sequence Information
- Coding Sequence
- atgatgttTAAAGGCAACAGTAGTCGattggaattgttaattgagAAAATTCACAATCATAAAGGAAATTCGGAAATGGCTAACACAGTTTCGAGaggTTCAATTGGAACTGAACACGAAAGTTGGGGTTCCAATACTCCAGAACAGGCTTCTCCAGCTCCAAGTTCATGTCCAACCCCTTGCTCGAGTTTGAGCGATATTGCTGAAAGCGATGTAGCCTTCACTGTAGGAATTACAGAAACGACACCTTATGcatgtaaaatatgtaataaggCATTTGCTAGATCATCTTTGCTAAGTAAACACGAACAGTCTCACACTGACCACCTTCAATATGGGTGTTCTTATTGTCCCCGCCTGTTTAAGCACAAAAGGTCTAGGGACAGGCACATTAAACTTCATACTGGTGATAAAAAGTACAAATGCATCCATTGCCAAACTGCATTTTCAAGAAGtgaccacttaaaaattcatatgaaGACACATGACAATAGTAAACCATTTCGTTGCCTCATTTGTAATCGTGGGTATAATACGGCTGCTGCTCTAACTTCTCATCAACAAAGTCACTCAAAGCAAGTTGCAGATAGAAGTATTAGTCCTGAAAGCTTTAAATGCCTTCAATGTTCAGAATTGTTTAGCGAATACGACCAACTTcagATGCACATAGCAAGTATccataacaatattttattaaactcaTCTCCATCAAATTTATCCGTAACAAAACACGAAATAATTACGAATCCCCAAATAGAACTCACAAAATGGGTGTGTATGTACTGCAGtcgtgattttttaataattgaagaatTACAACATCACATCAACACTGACCATCAAGCTCTCGTCAATGGCAACTTTCTGGGGTCTCATGGAAAGAATGCAGTTGAGTCACCTTTAACCTCAAACAATAATGACTTATCTTTAATCAACGACAGTCACTCAGATAGTGCACCCACTTATGCTTGTGAGAGTTGTACCATGCATTTTGATTCCGTCGATAAATTAAGGGTGCATGAAAATTGTATTCATTGGAAGCCACCTATCGCTCCATCATCCAAGTCGTTTAATAAAGATTGCAACCCAGGTTTACTtccaactcaaaatttcagcGGTTCGGAAGGTTTAACTAACTCAAACAGCATTCAACCAATTCAACTGCAGCCAACCGATTTAAGTCGCAAACGACGAGGAACTGATGTCGAAGAAAAAATTTCACCAAAACGAATGAACAATACGACCACCGTGCCAAACGTAACCAGTAGTTCTCATGATTCTTCCAAAAAAGAAGAGTGGACAAGTTATATATGCAGTATATGTGGAACACAGCTACCAAATTTTGCATCATTTATGGTGCACATGGACATTCACATGTCTGTTAGTGCCACTCCGTCTAATGTTATATTAGGAGGATATTGTCCTCTGTGCGGTGAAGCCTATAGAGATCAAACCGAACTCAATAATCATATTGTATTACATACATTAACCTATAAACTTGGATGGTGTTGTCGTGTATGCAAAAAGGTTTTCAACGATAATTTGGAAGACTTCCAACGTCACCTAATGGAAAACCATGCTTGTACGACTTATAAATGCTGCGTTTGTGAACAACTGTTCGAATCGAAGACTGCTATGTTGatgcACTTGACCAAGAAACATAGTAACGAGTGTCAACACTTTCGTTGTAAATTTTGCCCTGaacaaatatttcataatcaaATCAGTGCAGAAATGCATATCTCCCAGCATGTTCCACGCTTGTTTAACCAAACCCGTAAGTCGTCCGGTTATGGAGCCTATCCTTTTCAAAATGACTTTAATGCTCGAGTGGGTTCGGTAAAAAGTTTGCAATGTCCGTTCTGTCGTCAATGTTTTAAGGGAgaatatttacaacaaatgCACATCCTGAAGGATCACAAAGACTTTTTGGAGgcaCACGGCTCTCGCGTCACCGAGGAATGCTCTATGGACCAGCTGTCTTCTTCGAGAGGACAAAAGGAAGGGCAAGCAAATTCACCAACTATTCCATTCACTAATTCGTTACCGTTATCAGAAAGTATGTCGAGATatgataaaagtttaatggATACCATAATATGTGATATTTGTGGTTCTGCAGATTTCAACAACGATTCTGAATTATCTGCGCATAAAAAACTGCACCATGTGAAGTCCAAAATTGGTCCCGTGAGCTTACAGTGCGCATATTGTAACGAGCACTGCAAATCACGTTCCGATTTAGAAAATCATATGAAAAATCACCAAATAAATAGCAACAAAGGTAAACATAAGTGCAACATTTGTGATGAAATTTATTCTTCCGCCATCACCTTAGCCGAACATAAATTATCTCACTGTAAAATAGTGTCTGGCAACACCTGCACCCAATGCAAGACTATCCTTTCGGACGAACAATCATTTTATTCCCATCAACTCAAACACAGTTCAGTTTTGAGCAAGTCGAATGCCCAAATATCTCTACCGGCtaattgcataatttgttGCCAAACATTACAAACAGACGTAGAAATTAAACTTCATGCTAACTTTCATCTCCAACACTTACTCCATAAAGAATATTTGtgcaatatttgcaataaaatttttgatactcGTACAGGAATCACAATTCCAAGTTACGAAAAGAATTCGGAAGGTTTGCAGATTTCAGTGTGCAAAGAGTGTATTAATAAGTGTGGCAATAACAGCAGTTCCAACAGTCCAAGACTTACCAGCATAAAAAGCgaaaatttggataaaaagATATATTCATGCATAAAGTGTCCTCAAACATTTGAAACTGAAAGCGAAGTAAAAAAACATGCTGCTACACATATTAATGATGGAATTAACCACGAATGTCACATTTGCAGAAGTATTTTTTCGACACCTCTAAAGTTACAGTTGCACGTAATTGAACACAGCTTTTTTGGCACTGGCCAATTTAGATGCTACATATGCAGTTCAGTCTTTACAACTGCAAATGGATTACTTTCCCATATGCTGGAACATGGAGCCAATGCCAAACCTTACGAATGTGCTACTTGCCAAATGAAGTTCTTTTTCCAAACAGAACTGGATAACCACAAATATGAACATATTATATCTCAAGCAGTTGCTCAATCAATAAACGTTAATAGTGTAGATGATTCTGAAGTGTTAAATTCGGAAAAGCTAAAAATGGAACATTTAGGAAAGTGTCCATACTGTGATATGACAACATCGCATGTTTACTTAGATGTACATATAagattttgtttacaaaatccagatattaaaaaacgtcacgaaaataaacgtaatgcaaaatttgtagAAAGCACAAATTCTGTTTCCGAGAGTGAAGATAAggctttataa
- Protein Sequence
- MMFKGNSSRLELLIEKIHNHKGNSEMANTVSRGSIGTEHESWGSNTPEQASPAPSSCPTPCSSLSDIAESDVAFTVGITETTPYACKICNKAFARSSLLSKHEQSHTDHLQYGCSYCPRLFKHKRSRDRHIKLHTGDKKYKCIHCQTAFSRSDHLKIHMKTHDNSKPFRCLICNRGYNTAAALTSHQQSHSKQVADRSISPESFKCLQCSELFSEYDQLQMHIASIHNNILLNSSPSNLSVTKHEIITNPQIELTKWVCMYCSRDFLIIEELQHHINTDHQALVNGNFLGSHGKNAVESPLTSNNNDLSLINDSHSDSAPTYACESCTMHFDSVDKLRVHENCIHWKPPIAPSSKSFNKDCNPGLLPTQNFSGSEGLTNSNSIQPIQLQPTDLSRKRRGTDVEEKISPKRMNNTTTVPNVTSSSHDSSKKEEWTSYICSICGTQLPNFASFMVHMDIHMSVSATPSNVILGGYCPLCGEAYRDQTELNNHIVLHTLTYKLGWCCRVCKKVFNDNLEDFQRHLMENHACTTYKCCVCEQLFESKTAMLMHLTKKHSNECQHFRCKFCPEQIFHNQISAEMHISQHVPRLFNQTRKSSGYGAYPFQNDFNARVGSVKSLQCPFCRQCFKGEYLQQMHILKDHKDFLEAHGSRVTEECSMDQLSSSRGQKEGQANSPTIPFTNSLPLSESMSRYDKSLMDTIICDICGSADFNNDSELSAHKKLHHVKSKIGPVSLQCAYCNEHCKSRSDLENHMKNHQINSNKGKHKCNICDEIYSSAITLAEHKLSHCKIVSGNTCTQCKTILSDEQSFYSHQLKHSSVLSKSNAQISLPANCIICCQTLQTDVEIKLHANFHLQHLLHKEYLCNICNKIFDTRTGITIPSYEKNSEGLQISVCKECINKCGNNSSSNSPRLTSIKSENLDKKIYSCIKCPQTFETESEVKKHAATHINDGINHECHICRSIFSTPLKLQLHVIEHSFFGTGQFRCYICSSVFTTANGLLSHMLEHGANAKPYECATCQMKFFFQTELDNHKYEHIISQAVAQSINVNSVDDSEVLNSEKLKMEHLGKCPYCDMTTSHVYLDVHIRFCLQNPDIKKRHENKRNAKFVESTNSVSESEDKAL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01294182;
- 90% Identity
- iTF_00273027;
- 80% Identity
- -