Rlut005730.1
Basic Information
- Insect
- Rhagonycha lutea
- Gene Symbol
- prdm10
- Assembly
- GCA_958510855.1
- Location
- OY294036.1:75417636-75424744[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.87 58 5.4 0.2 2 23 212 233 211 233 0.94 2 13 1.4e-05 0.00095 20.5 3.1 2 23 242 264 241 264 0.97 3 13 0.00044 0.029 15.8 2.1 1 23 366 388 366 388 0.98 4 13 0.14 9.2 7.9 5.0 1 21 392 412 392 413 0.95 5 13 2.4e-06 0.00016 22.9 1.7 1 23 420 443 420 443 0.97 6 13 0.017 1.1 10.8 1.5 1 20 447 466 447 468 0.93 7 13 1e-05 0.00067 20.9 1.9 1 23 478 500 478 500 0.97 8 13 0.0003 0.02 16.3 0.4 1 23 513 535 513 535 0.97 9 13 0.00011 0.0074 17.7 1.6 1 23 540 562 540 562 0.99 10 13 0.00013 0.0085 17.5 0.8 2 23 568 589 567 589 0.96 11 13 1.7e-05 0.0011 20.2 2.5 1 23 593 616 593 616 0.97 12 13 0.003 0.2 13.1 1.8 2 23 619 640 618 640 0.97 13 13 0.0013 0.084 14.3 4.8 1 20 645 664 645 668 0.90
Sequence Information
- Coding Sequence
- ATGAATTTAAACGGTGAAAATAACAACAACGATAACGCATTAAGTTGTGGCATTTGTGGCAAACCTCATAATTATTTAGAATGCGGATTGGTGGAAATTAAACGGCAGgtTGCCGATAGCCCAATTTTATCTAGGGCACGTTCTACGTTACCGTCTTGTGTTAAGTTAGTGTTGATGTCAGATGGAAGTTATTCCATTGCAGCTTCTACGATTATTCACAATGGAACTCAATTTGGTCCATTGGAAGCTCAAAAGTTGCTTACTTTGGATCCCAACATTCAATTgccattaaaaatgtttaattccCAATTGGAAAACGTATCTGAGTATTATTTCGATACGTGTGATGAAAACAACGCCAACTGGATGATTTTTGTTAATCCTGCACAGAATTTTGAAGAACAAAATTTGATGTGTTTTCAGGAAgattctaaaattttttatgcCACCACAAAAGACATAAATGTGggagaatatttaaaattatggtatTCACCTTATTATGCCAAATTGATGGGGAGAGAGGTGTTAGGACCTACAATTTCTGTAAATTTGCCTGCTACAAATGTGACTGCTTTAGATATCGATGAACTACTAAAGACACAGCAAAATATTGTTGAACGAGATAATTGGTCATGTAAATTTTGTGGCAAATTAGAAAATACTGTTAGTGAATTTGCTACTCATATGATGGAACATTATACAAAAATGGTTCTTGAGAAAACTTGTGAAGTTTGTAATAAGTCTTTTCCTGATAGATCGcatTTACGTATGCATAAGAAAACTGAACATAAAATAAGAGCTAAATGTAACAAACGTAAGCAAATGAATATTCAGATGCAAGTGATAAACAAATCCAAAGAAGACGTCGGTGGACCTCTATTTAACGATGTCTTAAACGACAGTTTTGATAACAGCAATTTAGCAATGCCTAATTTAGAATTGAACCAATTTAGTTTAAGTTTAGAAAATACTATTGCCAATCAAGGTATTCTCGAAAATGACAATTTAAGTTTAAATGCTGACATTTTATTAATGGACAATGTAAAGGAGTTtgatcactttaattttgaaattggtgAAAGTCAAGAGCAGCATGTGTGTGATATTTGTTTAAAGTCTTTTTCAAAAATGCTTCTCCTCAGATTGCACATGAGAAGGCACACTGGAACGTATACTTGTCGTCAATGTTGCAAGATATTTTCACGAAGTGAATCCTTAAATACTCACCTCTGCAATATATACAAACCTCCcgattttgtttgtaatttttgccAACGtacttttattacaaaaaagcaATTAAAACGACATATAAATGTAGTCCATGACAAAAAATACATTTGCAAAAACTGCGGCACTAATTTTTATTCCCCGAAGGAATTCAGTGATCATGTTTGTAATGCCATACCAAATTCCAATAAAAAGTCGTATAACTGTCCAACATGCAACAAAGAATTTTTTCGTCAGCAGACTTTGAAAAGGCACATTAAGGCGCATACTAGTAACATGACCAAAGTACAAACGacagaaaattttatttgcgaAATTTGTGGTGTCCGATATAATACTCCCAAAGGACTTCGCATGCACATTTGTCTTCACAAAAACCGTAATTTTAAGTGCGAGGTTTGCAATAAAAAGTACTTTAGACTGGACGTTTTGCGTACTCACATGGAAACACATTTTCCATCAaagGTATCATGCAAGGTATGCAACAAAGAATGCAAGTCTCAAAGCGCTTTAGCAAATCACATGGGTATACATAGGAATCAATTTCGGTGTGATAGTTGTCCAAAATCGTACCATCAGCagtcaaatttaataaaacatcaGCAAAGCGTTCATACGAATAAGTGTAATGTGTGTAAGAAAGCGTTTGATTcggaaaaattgtttaaattacatACCAAGGAACATGGTGTTCAGTTTTTCCAATGTCCTGTTtgtaaaaagtattttaaactGAAGAGTTCTTTACGCCGACACTGTAAGCAGGCTCATCCTGATCAAAGTATTGAAATATTAGTATCTGAAGCTAAATGTAAAGGAATTGTACTTAACAATGCTGAGCCTGTAGAAAACTTGATTGAAGATAACGGCGCCGGCGTTAGTAGTATTGAAAAAGACATTCAAGGGGATTATGAAACCAATTTGGCTGATAGCAACGGTCCAGTTAACTTGGATAATATTGTCACTAATTTTGAGGATATTATTAACGATTATGACTGTACAGATGAGGAATATTTGCTCATTGATAAGAAAACGAGTGACAATGTTGAaggaattttagattttaatgaTTTATCTATGGACTTCGACAGTCATCTTAATATACCAAATACTTCCGAAAATAACAGAGAAATTTGTTTATCAATGCCGGATTTGTCCACTGGTGATCAGGAAATTACCTTAGGAGAAAATGCGTATGTACTAGAGAATGGCACTATTGTGGACAGGAAAGAGCCAGGCAAATATGTTTGTTATGtattaaattag
- Protein Sequence
- MNLNGENNNNDNALSCGICGKPHNYLECGLVEIKRQVADSPILSRARSTLPSCVKLVLMSDGSYSIAASTIIHNGTQFGPLEAQKLLTLDPNIQLPLKMFNSQLENVSEYYFDTCDENNANWMIFVNPAQNFEEQNLMCFQEDSKIFYATTKDINVGEYLKLWYSPYYAKLMGREVLGPTISVNLPATNVTALDIDELLKTQQNIVERDNWSCKFCGKLENTVSEFATHMMEHYTKMVLEKTCEVCNKSFPDRSHLRMHKKTEHKIRAKCNKRKQMNIQMQVINKSKEDVGGPLFNDVLNDSFDNSNLAMPNLELNQFSLSLENTIANQGILENDNLSLNADILLMDNVKEFDHFNFEIGESQEQHVCDICLKSFSKMLLLRLHMRRHTGTYTCRQCCKIFSRSESLNTHLCNIYKPPDFVCNFCQRTFITKKQLKRHINVVHDKKYICKNCGTNFYSPKEFSDHVCNAIPNSNKKSYNCPTCNKEFFRQQTLKRHIKAHTSNMTKVQTTENFICEICGVRYNTPKGLRMHICLHKNRNFKCEVCNKKYFRLDVLRTHMETHFPSKVSCKVCNKECKSQSALANHMGIHRNQFRCDSCPKSYHQQSNLIKHQQSVHTNKCNVCKKAFDSEKLFKLHTKEHGVQFFQCPVCKKYFKLKSSLRRHCKQAHPDQSIEILVSEAKCKGIVLNNAEPVENLIEDNGAGVSSIEKDIQGDYETNLADSNGPVNLDNIVTNFEDIINDYDCTDEEYLLIDKKTSDNVEGILDFNDLSMDFDSHLNIPNTSENNREICLSMPDLSTGDQEITLGENAYVLENGTIVDRKEPGKYVCYVLN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00927962;
- 90% Identity
- iTF_01292378;
- 80% Identity
- -