Lyun017577.1
Basic Information
- Insect
- Lycocerus yunnanus
- Gene Symbol
- PRDM4
- Assembly
- GCA_036346125.1
- Location
- JARFIX010000037.1:2570973-2573981[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 1.2 1.3e+02 4.5 0.2 2 23 211 232 210 232 0.92 2 13 1.9e-05 0.002 19.7 3.1 2 23 241 263 240 263 0.97 3 13 2.7e-05 0.0029 19.2 0.8 1 23 366 388 366 388 0.99 4 13 0.00051 0.055 15.1 5.4 2 21 393 412 393 413 0.94 5 13 1.8e-05 0.0019 19.7 1.1 1 23 420 443 420 443 0.96 6 13 0.021 2.2 10.1 3.3 1 21 447 467 447 468 0.93 7 13 8.2e-06 0.00087 20.8 2.1 1 23 478 500 478 500 0.97 8 13 0.00047 0.05 15.3 0.2 1 23 514 536 514 536 0.97 9 13 3.2e-05 0.0034 19.0 1.3 1 23 541 563 541 563 0.98 10 13 2.8e-05 0.003 19.1 2.3 2 23 569 590 568 590 0.97 11 13 7.8e-08 8.3e-06 27.2 1.2 1 23 594 617 594 617 0.97 12 13 0.02 2.1 10.2 0.6 2 20 620 638 619 641 0.90 13 13 8.4e-06 0.00089 20.8 1.1 2 23 647 669 646 669 0.96
Sequence Information
- Coding Sequence
- ATGAATTTCAACGTGGAAAATAACAACGATAACGCGTTCGGATGCGGTATTTGTGGTAAACCTCATAATTATTTAGAATGCAGATTGGTAGAAATTAAACAGCAGattgcCGATACCCCAATTTTATCTAGAGCACGCTCTACGATACCATCGTGTGTTAAATTAGAATTGATGTCAGATGGAAGTTATTCTATTGCGGCTTCTACGGTTATCGGAAAAGGAACTCAATTTGGTCCTTTGGAAGCCCAAAAGTTGCTTACTTTGGATCCAAGCATTCAATTACCATTGAAGATGTTTAATTCTGAAATTGAAAACTTATCggaatattattttgatacaTTAGATGAAAACCATGCCAATTGGATGATCTTTGTTAATTCTGCTCAGACTTGTGAGGAGCAAAATTTGATGTGTTTTCAGgaagagttcaaaattttttacgttACCACTAAGGACATAAAAGTGGGAGAACACTTAAAGTTATGGTATTCACCTCAATATGCCAAATTGATGGGGAAAGAGGTGTTGGGATCTGCCATTCCTGTAAGTTTTCCTGTTGAAAATGTGTCTGCTTTAGATATCGACGAACTATTGAAGTCGCAGCAAAATATTGTAGAAAGAGATAATTGGTCATGTAAATTTTGTGGCAAATTAGAAAATACCGTTAGTGAATTTGCCACTCATATGATCGAACATTACACCAAAATGATCTTTGAGAAAACTTGTGAAGTTTGCAAAAAGTCTTTTCCTGATAGATcgcaCTTAACTATGCATAAAAAAACTGTACATAAAACGAGTAGAGTTAAATATAAGAAACGTAAACAAATGAATATTCAGAAGCAAGTGCCTAATAAAAATAAGGAAGATGTTGGTGGACCTCTATTTAACGACATCTTAAACGATAGTTTTGATAACAGCAATTTAGCAATGCCTAATTTAGAATTGAATCAATTTAGTTTGAGTTTGGAAAACACTGTTGCGAATCAAAGTATTCCAGAAAACGATAATTTAAGTCTAAATGCTGACATTTTATTAGTGGACAATGTAAATGAGTTTGatcactttaattttgaaattggtgAAAGCAAGGAGCAATATGTGTGTGACATATGTTTAAGGTCCTTTACAAGAGTATTTCTTCTTAGATTGCACATGAAAATGCACACTGGAACGAATACTTGTCACCACTGTCGCAAGGTGTTTTCACGAAGCGAATCCTTAAAGAGTCACCTCTGCGATATATACAATCCtcctaattttatttgtaatttttgctaTCGTAGTTTTATATCAAAAAAACAACTAAAACGACATATAATTGTGGTCCACGAAAAGAAGTTCAGTTGCAAAAAATGCGGCACAAATTTTTATTCTCCTAAAGAATTCAGCGATCATACTTGCAATGCCTTACCTAATTCCAACAAAACGTCTTACAACTGTCCAACGTGCAACAAAGAATTTTTTCGCCAGACAACTTTGAAAAAGCATATTAAGGCACATTCTAGCAACGTGAAAAAAGTAGTGCAACTGCCCGAGAAATTTATATGTGACATTTGTGGTGTTGGATATAATACTCCCAAGGGTCTACGCATGCACATTTGTCTTCATAAACAACGTAATTTTGagtgcaaaatttgcaataaaaggttttttagaATTGACGTTTTGAGAACTCACATGGAAACACATTTTCCATCaaaggtgTCGTGTAAAGTATGCAATAAGGAATGCAAGTCTCAAAGTGCATTAACAAATCACATGatcaaacataaaaatttatttcgatgTGACGATTGTCCAAAATCGTACAATCAGCAGtctaatttaacaaaacatcaACAAAGTGTTCACACGAATAAGTGTAATGTGTGTAAGAAAATATTTGGCtcggaaaaattattaaagatgcATAACGTGGAACACGGCATGCAGTATATTCAATGTCCAGATTGCAAAAGGTATTTCAAACTGAAGAGTTCTTTACGCCGACACATTAAGCAGGCTCATCCTGATCAAAGTATTGAAAAGTTATTGTCCGAAgctaaattgaaaaatgttatacTTAACAAAGCAGagtttgggaaaaattttcttGATGATAACGGTGTTGGTGATCTTGCAAAAGATATTCAAGGAGAATATGAAACTAATTTGGTTGATAGTAACGGCCCAGTTAATTTGGATAATATCGTCACTAATTTTGATGATATTATCAACGATTATGACTGCACCGATGAGGAATATTTGTtgattgataaaaaaacaagtgATAATGTTGATGGTATTTTGGACTTTAACGATTTGTCTATGGATTTTGACAGACATCTTAATATACCAAGCACTGCCGAAAATAATAGGGAAATTTGTCTGTCAATGCCGGATTTATCTACGGGTGATCAGGAAATTACATTAGGAGATAGTGCATATGTGCTAGAGAACGGCACAATTGTGGACAGAAAAGAGCCCGGAAAATATGTTTgttacgttttaaattaa
- Protein Sequence
- MNFNVENNNDNAFGCGICGKPHNYLECRLVEIKQQIADTPILSRARSTIPSCVKLELMSDGSYSIAASTVIGKGTQFGPLEAQKLLTLDPSIQLPLKMFNSEIENLSEYYFDTLDENHANWMIFVNSAQTCEEQNLMCFQEEFKIFYVTTKDIKVGEHLKLWYSPQYAKLMGKEVLGSAIPVSFPVENVSALDIDELLKSQQNIVERDNWSCKFCGKLENTVSEFATHMIEHYTKMIFEKTCEVCKKSFPDRSHLTMHKKTVHKTSRVKYKKRKQMNIQKQVPNKNKEDVGGPLFNDILNDSFDNSNLAMPNLELNQFSLSLENTVANQSIPENDNLSLNADILLVDNVNEFDHFNFEIGESKEQYVCDICLRSFTRVFLLRLHMKMHTGTNTCHHCRKVFSRSESLKSHLCDIYNPPNFICNFCYRSFISKKQLKRHIIVVHEKKFSCKKCGTNFYSPKEFSDHTCNALPNSNKTSYNCPTCNKEFFRQTTLKKHIKAHSSNVKKVVQLPEKFICDICGVGYNTPKGLRMHICLHKQRNFECKICNKRFFRIDVLRTHMETHFPSKVSCKVCNKECKSQSALTNHMIKHKNLFRCDDCPKSYNQQSNLTKHQQSVHTNKCNVCKKIFGSEKLLKMHNVEHGMQYIQCPDCKRYFKLKSSLRRHIKQAHPDQSIEKLLSEAKLKNVILNKAEFGKNFLDDNGVGDLAKDIQGEYETNLVDSNGPVNLDNIVTNFDDIINDYDCTDEEYLLIDKKTSDNVDGILDFNDLSMDFDRHLNIPSTAENNREICLSMPDLSTGDQEITLGDSAYVLENGTIVDRKEPGKYVCYVLN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00273012; iTF_00268900; iTF_00270296; iTF_00271642; iTF_01294165; iTF_01292378;
- 90% Identity
- -
- 80% Identity
- -