Rful028804.1
Basic Information
- Insect
- Rhagonycha fulva
- Gene Symbol
- prdm10
- Assembly
- GCA_905340355.1
- Location
- HG996555.1:31360095-31366959[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 1.8 53 5.4 0.2 2 23 216 237 215 237 0.94 2 13 3e-05 0.00087 20.5 3.1 2 23 246 268 245 268 0.97 3 13 0.00085 0.025 15.9 1.7 1 23 370 392 370 392 0.98 4 13 0.29 8.4 7.9 5.0 1 21 396 416 396 417 0.95 5 13 5e-06 0.00014 22.9 1.7 1 23 424 447 424 447 0.97 6 13 0.077 2.2 9.7 1.6 1 20 451 470 451 472 0.93 7 13 2.1e-05 0.00062 20.9 1.2 1 23 482 504 482 504 0.97 8 13 0.00064 0.018 16.3 0.4 1 23 517 539 517 539 0.97 9 13 0.00023 0.0068 17.6 1.6 1 23 544 566 544 566 0.99 10 13 0.00015 0.0044 18.3 1.3 2 23 572 593 571 593 0.96 11 13 3.6e-05 0.001 20.2 2.5 1 23 597 620 597 620 0.97 12 13 0.0066 0.19 13.1 1.3 2 23 623 644 622 644 0.96 13 13 0.0026 0.076 14.3 4.8 1 20 649 668 649 672 0.90
Sequence Information
- Coding Sequence
- ATGTTGCAAACGATGAATTTAAACGGTGAAAATAACAACAACGATAACGCGTTAGGTTGTGGCATTTGTGGCAAACCCCATAATTATTTAGAATGCAGATTGGTGGAAATTAAACGGCAGGTGGCCGATACCCCAATTTTATCTAGGGCACGCTCTACACTACCGTCTTGTGTTAAGTTGGTGTTGATGTCAGATGGAAGTTATTCTATTGCAGCTTCTACGATTATTCACAATGGAACTCAATTTGGTCCACTGGAAGCTCAAAAGCTGCTTACTTTGGATCCCAACATTCAATTGCCATTAAAAATGTTTAATTCCCAATTGGAAAATGTATCAGAGTATTATTTCGATACGTGTGATGAAAACAACGCCAACTGGATGATTTTTGTTAATCCTGCACAGAATTTTGAAGAACAAAATTTGATGTGTTTTCAGGAAGACTCTAAAATTTTTTATGCGACCACAAAAGATATAAATGTGGGAGAATATTTAAAATTATGGTATTCACCTTATTATGCCAAATTGATGGGGAGAGAGGTGTTAGGACCTACTATTTCTGTAAATTTACCTGCTAAAAATGTGACTGCTTTAGATATCGATGAACTATTGAAGACACAGCAAAATATTGTTGAACGAGATAATTGGTCATGTAAATTTTGTGGAAAATTAGAAAATACTGTTAGTGAATTTGCCACTCATATGATGGAACATTATACAAAAATGGTTCTTGAGAAAACTTGTGAAGTTTGTAATAAGTCTTTTCCTGATAGATCGCATTTACGTATGCATAAGAAAACTGAACATAAAATAAGAGCTAAATGTAACAAACGTAAGCAAATGAATACTCAGATACAAGTGATAAACAAAACCAAAGAAGACGTTGGTGGACCTCTATTTAATGATGTCTTAAACGACAGTTTTGATAACAGCAATTTAGTAATGCCTAATTTAGAATTGAATCAATTTAGTTTAAGTTTAGAAAATACTGTTGCAAATCAAGGTATTCTCGAAAATGACAATTTAAGTTTAAATGCTGACCTTTTACTAATGGACAACGTAGAGAAGTTTGATCACTTTAATTTTGAAATTGGTGAAAGTCAAGAGCAGCATGTATGTGATATTTGTTTAAAGTCTTTTTCAAAAGTGCTTCTCCTCAGATTGCACATGAGAAGGCACACTGGGACGTATACTTGTCGTCAGTGTTGCAAGATATTTTCACGAAGCGAATCCTTAAATACTCACCTCTGCAATATATACAAACCTCCCGATTTTGTTTGTAATTTTTGTCAACGTACTTTTATTACAAAAAAACAATTAAAACGACATATAAATGTGGTCCATGACAAAAAATACATTTGCAAAAGGTGCGGCACTAATTTTTATTCCCCGAAAGAATTCAGTGATCATGTTTGTAATGCTATACCAAATTCCAATAAAAAATCGTATAACTGTCCAACATGCAACAAAGAATTTTTTCGTCAGCCGACTTTGAAAAGACACATTAAGGCGCATTCTAATAACATGACCAAAGTACAAACCTCGGAAAATTTTATTTGCGAAATTTGTGGTGTTCGATATAATACTCCCAAGGGCCTACGCATGCACATTTGTCTTCACAAAAACCGCAATTTTAAGTGCGAAGTTTGCAATAAAAAATATTTTAGATTGGACGTCTTGCGTACTCACATGGAAACACATTTTCCATCAAAGGTATCGTGCAAAGTATGCAATAAAGAATGCAAGTCTCAAAGCGCTTTAACAAATCATATGGGTATACATAGGAATCAATTTAGGTGTGACAGTTGTCCAAAATCGTACCATCAGCAGTCAAATTTAATAAAACATCAACAAAGCGTTCATACGAATAAGTGTAATGTGTGTAAGAAAGCATTTGATTCGGAAAAATTGTTCAAATTACATACCATGGAACATGGTGTTCAGTATTTCCAATGTCCTGTTTGCAAAAAGTATTTTAAACTGAAGAGTTCTTTACGTAGACACTGTAAGCAGGCTCATCCTGATCAAAATGTTGAAATATTAGTATCTGAAGCTAAATGCAAAGGAATTGTACTTAACAAAGCTGATCCTGTAGAAAACTTAATTGAAGATAACAGCGTTAGTAGGCTTGAAAAAGACATTCAAAGGGATTATGAAAACAATTTGGCTGATAGTAACGGTCCAGTTAACTTGGATAATATTGTCACCAATTTTGATGATATTATTAACGATTATGACTGTACCGATGAGGAATATTTGCTGATTGATAAAAAAACAAGTGACAATGTTGAAGGAATTTTAGATTTCAATGATCTATCTATGGATTTTGACAGTCATCTTAATATACCAAATACTGCCGAAAATAGAGAAATTTGTTTGTCCATGCCGGATTTGTCCACTGGTGATCAGGAAATTACCTTAGGAGAAAATGCGTATGTACTAGAGAATGGCACTATTGTGGACAGGAAAGAGCCAGGCAAATACGTTTGTTATGTATTAAATTAG
- Protein Sequence
- MLQTMNLNGENNNNDNALGCGICGKPHNYLECRLVEIKRQVADTPILSRARSTLPSCVKLVLMSDGSYSIAASTIIHNGTQFGPLEAQKLLTLDPNIQLPLKMFNSQLENVSEYYFDTCDENNANWMIFVNPAQNFEEQNLMCFQEDSKIFYATTKDINVGEYLKLWYSPYYAKLMGREVLGPTISVNLPAKNVTALDIDELLKTQQNIVERDNWSCKFCGKLENTVSEFATHMMEHYTKMVLEKTCEVCNKSFPDRSHLRMHKKTEHKIRAKCNKRKQMNTQIQVINKTKEDVGGPLFNDVLNDSFDNSNLVMPNLELNQFSLSLENTVANQGILENDNLSLNADLLLMDNVEKFDHFNFEIGESQEQHVCDICLKSFSKVLLLRLHMRRHTGTYTCRQCCKIFSRSESLNTHLCNIYKPPDFVCNFCQRTFITKKQLKRHINVVHDKKYICKRCGTNFYSPKEFSDHVCNAIPNSNKKSYNCPTCNKEFFRQPTLKRHIKAHSNNMTKVQTSENFICEICGVRYNTPKGLRMHICLHKNRNFKCEVCNKKYFRLDVLRTHMETHFPSKVSCKVCNKECKSQSALTNHMGIHRNQFRCDSCPKSYHQQSNLIKHQQSVHTNKCNVCKKAFDSEKLFKLHTMEHGVQYFQCPVCKKYFKLKSSLRRHCKQAHPDQNVEILVSEAKCKGIVLNKADPVENLIEDNSVSRLEKDIQRDYENNLADSNGPVNLDNIVTNFDDIINDYDCTDEEYLLIDKKTSDNVEGILDFNDLSMDFDSHLNIPNTAENREICLSMPDLSTGDQEITLGENAYVLENGTIVDRKEPGKYVCYVLN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00927962;
- 90% Identity
- iTF_01294165;
- 80% Identity
- -