Rful007248.1
Basic Information
- Insect
- Rhagonycha fulva
- Gene Symbol
- -
- Assembly
- GCA_905340355.1
- Location
- HG996554.1:112655458-112656903[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.18 79 4.3 0.2 18 48 115 146 109 151 0.79 2 11 1.3 5.9e+02 1.5 0.1 21 34 147 160 142 172 0.74 3 11 0.00012 0.053 14.5 0.1 14 52 167 206 158 208 0.83 4 11 7.2 3.2e+03 -0.8 0.0 23 46 205 228 201 235 0.79 5 11 1.1 4.9e+02 1.8 0.0 21 52 231 262 227 264 0.83 6 11 9.1 4.1e+03 -1.2 0.0 21 45 259 283 255 286 0.78 7 11 0.032 14 6.7 0.0 26 52 292 318 285 320 0.86 8 11 0.96 4.3e+02 2.0 0.0 22 52 316 346 313 347 0.84 9 11 0.84 3.8e+02 2.2 0.0 23 44 345 366 341 370 0.81 10 11 0.1 47 5.1 0.1 21 52 371 402 366 404 0.89 11 11 0.53 2.4e+02 2.8 0.0 21 45 427 451 423 455 0.90
Sequence Information
- Coding Sequence
- ATGGAACCCGATTATAAAAATGTTAAGATCGAAGTTTTCGTTAAGGAGGAACCCCTGGAAAATGAAGATTACTTCGATGGTGATTACAAAGACACAGATGATTATAACGTCTACATACAAGAGACAAAGACGGAAATGGTTCATTGTGAACCGGAGCACCACCTCATTCACATGAAAGAAGAGCCTGATGATAACGTCGAAAGTGATTCATCAAACCAATTGTTTTGGAGCAGTCACTCAACGGAATCCTTCAAACATGAAAGTACTAAAAAGCTTCATTTTAATAGCACCGCGGACGGAAATTTGTTTAATCGTGAGGTAATTAAATTAAAAAGTGGTGTAAAAAGTCAGACTGTTGAAAGACCGTTCATTTGTGAAGTGTGCCATGCAAAATTTCCCAAGAGGAGCAGTTTGCAATATCACATTCGAATTCACACCGGGGAAAAACCGTTCACCTGCACTGTATGCGACAAGAAGTTCACCCGTAAAGGCGATTTGAAGTCGCACTCGAAAGTTCATTCAGGAGAAAAACCTTTTATATGTAATTTATGTAACGCTAAGTTTTCTCATCGCAGTAACCTGCAAAGACACTTAAAACTCCACACGGGTTATAAGCCGTTTGCTTGCAATGTGTGCAATAAGAGTTTTGCCCAAAAGACGTACTTGCAATATCACGAAAAAATGCATACGGGTGAAAAGCCCTTCGATTGTAATTTGTGTCAACGGAAGTTTACACGTGAAAGTTACTTGCGGTTGCACTTAAAAACCCACTCAGGTGAGAAGCCATTTGTTTGTGATTTATGCGATAAGAAGTTTCCTCATAAGGCCAGCCTACAGTCCCATTTAAAAATTCATCTCGACGAAAACGAATTTTTTTGCAGCGTCTGCAATCTGACCTTTAATCGAAAAGATAACTTACGTAGTCATTTAAAATTGCATGCCGATGAGAAGCCGTTTGTTTGTGATGTTTGCGATAAGAGATTTTCTGTAAAAAATAATTTTGATAGGCACGTGAGGGTCCACACCGGTGTGAAACCGTTCACGTGCGACGTGTGCAGTGCAACGTTTGGTAGAAAAAGTACTTTACAAGGTCACATTAAAACTCACACCAACGAGAGACCTTTCGTTTGTGATTTATGCGATTCGAAGTTTACACAAAACAGTCATTTGCAATATCATTTGAAAATTCATCGTGGGGAGAAGCCGTTTAATTGCGGTTTATGCCCTAAAACCTTTATTCGAAAAGGGGATTTAGATTGCCACTATAGAATTCATACTGGTGAAAAACCATTTGCTTGTAGTAAATGTGATAAAAAATTTATTCAGAAAAGCAACTTACAATATCACTTAAAAACTCACATTAATGAGAAGTAA
- Protein Sequence
- MEPDYKNVKIEVFVKEEPLENEDYFDGDYKDTDDYNVYIQETKTEMVHCEPEHHLIHMKEEPDDNVESDSSNQLFWSSHSTESFKHESTKKLHFNSTADGNLFNREVIKLKSGVKSQTVERPFICEVCHAKFPKRSSLQYHIRIHTGEKPFTCTVCDKKFTRKGDLKSHSKVHSGEKPFICNLCNAKFSHRSNLQRHLKLHTGYKPFACNVCNKSFAQKTYLQYHEKMHTGEKPFDCNLCQRKFTRESYLRLHLKTHSGEKPFVCDLCDKKFPHKASLQSHLKIHLDENEFFCSVCNLTFNRKDNLRSHLKLHADEKPFVCDVCDKRFSVKNNFDRHVRVHTGVKPFTCDVCSATFGRKSTLQGHIKTHTNERPFVCDLCDSKFTQNSHLQYHLKIHRGEKPFNCGLCPKTFIRKGDLDCHYRIHTGEKPFACSKCDKKFIQKSNLQYHLKTHINEK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00268823;
- 90% Identity
- iTF_01294092;
- 80% Identity
- iTF_01292089;